Variant report

Variant	rs12337839
Chromosome Location	chr9:93068643-93068644
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93067169..93069123-chr9:93074585..93076643,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10992866	0.88[EUR][1000 genomes]
rs10992972	0.82[ASN][1000 genomes]
rs10993042	0.91[AMR][1000 genomes]
rs10993071	0.91[AMR][1000 genomes]
rs12344025	0.92[EUR][1000 genomes]
rs12345270	0.92[EUR][1000 genomes]
rs12347165	0.91[AMR][1000 genomes]
rs12347538	0.92[EUR][1000 genomes]
rs12348363	0.91[AMR][1000 genomes]
rs12351745	0.90[EUR][1000 genomes]
rs16906332	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16906334	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16906335	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16936969	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28803562	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59300585	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7047535	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72741309	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72741312	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72758933	0.94[EUR][1000 genomes]
rs72758948	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1051180	chr9:92869383-93141038	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv540169	chr9:92869383-93141038	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv482531	chr9:92907692-93096360	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93064000-93069400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:93064000-93069400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr9:93064200-93069200	Weak transcription	HSMM	muscle
4	chr9:93065200-93070800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr9:93065600-93069200	Weak transcription	Fetal Kidney	kidney
6	chr9:93065800-93069600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:93066600-93069400	Weak transcription	Fetal Intestine Small	intestine
8	chr9:93066600-93069600	Weak transcription	Fetal Intestine Large	intestine
9	chr9:93067800-93069800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:93068200-93070000	Enhancers	Fetal Muscle Trunk	muscle
11	chr9:93068200-93071000	Enhancers	Fetal Lung	lung
12	chr9:93068200-93071600	Enhancers	Fetal Muscle Leg	muscle
13	chr9:93068200-93071600	Enhancers	Fetal Stomach	stomach
14	chr9:93068600-93069000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:93068600-93069000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr9:93068600-93069000	Weak transcription	HSMMtube	muscle

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