Variant report

Variant	rs12345270
Chromosome Location	chr9:93052596-93052597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93011546..93013972-chr9:93052355..93054328,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10992615	0.85[ASN][1000 genomes]
rs10992761	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10992762	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10992866	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11789542	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12337839	0.92[EUR][1000 genomes]
rs12344025	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12345191	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12345615	0.93[ASN][1000 genomes]
rs12346947	0.93[ASN][1000 genomes]
rs12347139	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12347538	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12351745	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12353226	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16906332	0.88[EUR][1000 genomes]
rs16906334	0.88[EUR][1000 genomes]
rs16906335	0.88[EUR][1000 genomes]
rs16936803	0.93[ASN][1000 genomes]
rs16936969	0.88[EUR][1000 genomes]
rs28537346	0.88[ASN][1000 genomes]
rs28803562	0.88[EUR][1000 genomes]
rs35985890	0.88[ASN][1000 genomes]
rs55913280	0.88[ASN][1000 genomes]
rs56125584	0.88[ASN][1000 genomes]
rs58438788	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59300585	0.88[EUR][1000 genomes]
rs62554842	0.90[ASN][1000 genomes]
rs7047535	0.88[EUR][1000 genomes]
rs72741309	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72741312	0.90[EUR][1000 genomes]
rs72758906	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72758908	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72758909	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72758910	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72758933	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72758948	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv614852	chr9:92786722-93100550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1051180	chr9:92869383-93141038	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv540169	chr9:92869383-93141038	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv482531	chr9:92907692-93096360	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93050600-93065800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:93050800-93052600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:93052000-93053000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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