Variant report

Variant	rs12337993
Chromosome Location	chr9:16393351-16393352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12235591	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12339503	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28859123	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34205747	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62540582	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6475047	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6475048	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7032639	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7033140	0.94[EUR][1000 genomes]
rs7041706	0.81[AMR][1000 genomes]
rs73413350	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7873374	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv6491	chr9:16389836-16398649	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16388800-16393400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:16390400-16393800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:16392000-16406800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:16393200-16394000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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