Variant report

Variant	rs12339503
Chromosome Location	chr9:16394621-16394622
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12235591	0.87[AMR][1000 genomes]
rs12337993	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28859123	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34205747	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62540582	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6475047	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6475048	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7032639	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7033140	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7041706	0.82[AMR][1000 genomes]
rs73413350	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7848378	0.89[ASN][1000 genomes]
rs7851416	1.00[ASN][1000 genomes]
rs7873374	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv6491	chr9:16389836-16398649	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16392000-16406800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:16394000-16395000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:16394000-16406800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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