Variant report

Variant	rs34205747
Chromosome Location	chr9:16389820-16389821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12337993	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12339503	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28859123	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36014733	0.97[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62540582	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6475047	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6475048	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7032639	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7033140	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73413350	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7873374	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv466264	chr9:16359608-16390629	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
4	nsv613669	chr9:16359608-16390629	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	esv2462705	chr9:16389073-16390515	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv9441	chr9:16389154-16389970	Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv2413865	chr9:16389207-16389924	Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3495011	chr9:16389299-16389833	Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3495014	chr9:16389306-16389820	Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3190	chr9:16389339-16389867	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16388800-16393400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:16389000-16390200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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