Variant report

Variant	rs12343226
Chromosome Location	chr9:101334311-101334312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10986192	1.00[ASN][1000 genomes]
rs10986247	1.00[ASN][1000 genomes]
rs10986473	1.00[ASN][1000 genomes]
rs11793304	1.00[ASN][1000 genomes]
rs12378676	1.00[ASN][1000 genomes]
rs13286162	1.00[ASN][1000 genomes]
rs13288889	1.00[ASN][1000 genomes]
rs1572473	1.00[ASN][1000 genomes]
rs16917637	1.00[ASN][1000 genomes]
rs17770838	1.00[ASN][1000 genomes]
rs2900382	1.00[ASN][1000 genomes]
rs57185876	1.00[ASN][1000 genomes]
rs57905636	1.00[ASN][1000 genomes]
rs59614727	1.00[ASN][1000 genomes]
rs60868407	1.00[ASN][1000 genomes]
rs66989623	1.00[ASN][1000 genomes]
rs7029361	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7044074	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73502480	1.00[ASN][1000 genomes]
rs7860298	1.00[ASN][1000 genomes]
rs7861148	1.00[ASN][1000 genomes]
rs871744	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv6633	chr9:101308371-101342811	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1040325	chr9:101328103-101354107	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv466438	chr9:101328200-101361584	Weak transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv614949	chr9:101328200-101361584	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101332200-101334800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:101332800-101334400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
3	chr9:101332800-101355600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:101333400-101339800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:101333600-101335200	Weak transcription	Spleen	Spleen
6	chr9:101333800-101335000	Enhancers	Fetal Intestine Large	intestine
7	chr9:101334000-101334400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:101334000-101335000	Enhancers	Fetal Intestine Small	intestine
9	chr9:101334000-101335400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:101334000-101335400	Enhancers	GM12878-XiMat	blood
11	chr9:101334200-101335000	Weak transcription	Brain Angular Gyrus	brain

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