Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:101176419..101179786-chr9:101179924..101182996,3	K562	blood:
2	chr9:101071599..101074576-chr9:101177617..101179609,2	K562	blood:
3	chr9:101173120..101175808-chr9:101177158..101179626,3	K562	blood:
4	chr9:101177574..101180366-chr9:101181658..101183744,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10986192	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10986247	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10986473	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11793304	1.00[CHB][hapmap];0.86[MEX][hapmap];1.00[ASN][1000 genomes]
rs1211545	1.00[ASN][1000 genomes]
rs12343226	1.00[ASN][1000 genomes]
rs12378676	1.00[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];0.92[LWK][hapmap];0.93[MEX][hapmap];0.87[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13286162	1.00[ASN][1000 genomes]
rs13288889	1.00[ASN][1000 genomes]
rs1342140	1.00[CHB][hapmap]
rs1572473	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16917637	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17770838	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs57185876	1.00[ASN][1000 genomes]
rs57905636	1.00[ASN][1000 genomes]
rs59614727	1.00[ASN][1000 genomes]
rs60868407	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66989623	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73502480	1.00[ASN][1000 genomes]
rs7860298	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7861148	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs871744	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101175600-101178000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:101175600-101179200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:101175600-101179400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr9:101175600-101184400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:101176000-101179200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:101176200-101178200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr9:101176200-101179200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:101177600-101179400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr9:101177800-101178600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr9:101177800-101178800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:101177800-101178800	Enhancers	K562	blood
12	chr9:101177800-101179000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr9:101177800-101179600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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