Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101187045..101191068-chr9:101192266..101195284,5	K562	blood:
2	chr9:101183187..101185622-chr9:101190369..101193309,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10986192	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10986247	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10986473	1.00[ASN][1000 genomes]
rs11793304	1.00[ASN][1000 genomes]
rs1211545	1.00[ASN][1000 genomes]
rs12343226	1.00[ASN][1000 genomes]
rs12378676	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13286162	1.00[ASN][1000 genomes]
rs13288889	1.00[ASN][1000 genomes]
rs16917637	1.00[ASN][1000 genomes]
rs17770838	1.00[ASN][1000 genomes]
rs2900382	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57185876	1.00[ASN][1000 genomes]
rs57905636	1.00[ASN][1000 genomes]
rs59614727	1.00[ASN][1000 genomes]
rs60868407	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66989623	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73502480	1.00[ASN][1000 genomes]
rs7860298	1.00[ASN][1000 genomes]
rs7861148	1.00[ASN][1000 genomes]
rs871744	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101188000-101193000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:101190800-101194600	Enhancers	K562	blood
3	chr9:101191400-101193400	Enhancers	Lung	lung
4	chr9:101191800-101193000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:101191800-101193000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:101191800-101193000	Enhancers	Brain Hippocampus Middle	brain
7	chr9:101191800-101193200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:101191800-101193200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:101191800-101193200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr9:101191800-101193200	Enhancers	Adipose Nuclei	Adipose
11	chr9:101191800-101193200	Enhancers	Osteobl	bone
12	chr9:101191800-101193600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:101192000-101193200	Enhancers	Fetal Muscle Leg	muscle
14	chr9:101192000-101194000	Enhancers	Fetal Intestine Small	intestine
15	chr9:101192200-101193000	Enhancers	Pancreas	Pancrea
16	chr9:101192600-101193400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr9:101192600-101193400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:101192800-101193000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr9:101192800-101193200	Enhancers	Fetal Lung	lung
20	chr9:101192800-101193400	Enhancers	Brain Cingulate Gyrus	brain

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