Variant report

Variant	rs12345510
Chromosome Location	chr9:72421688-72421689
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10283869	1.00[AMR][1000 genomes]
rs10521434	1.00[YRI][hapmap]
rs12340071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12342754	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12343258	0.81[AFR][1000 genomes]
rs12344521	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12347800	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12349363	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1411408	1.00[YRI][hapmap]
rs17518268	1.00[YRI][hapmap]
rs28498152	1.00[AMR][1000 genomes]
rs28731505	1.00[AMR][1000 genomes]
rs7036155	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7854014	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7866489	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72420200-72421800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:72420200-72422200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:72420600-72422400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:72421000-72422400	Enhancers	Stomach Mucosa	stomach
5	chr9:72421400-72421800	Flanking Active TSS	K562	blood
6	chr9:72421400-72421800	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr9:72421400-72422400	Enhancers	Fetal Lung	lung
8	chr9:72421600-72421800	Enhancers	Stomach Smooth Muscle	stomach
9	chr9:72421600-72422400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:72421600-72422400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr9:72421600-72426000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:72421600-72426600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr9:72421600-72427400	Weak transcription	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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