Variant report

Variant	rs7854014
Chromosome Location	chr9:72447526-72447527
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10283869	1.00[AMR][1000 genomes]
rs10521434	1.00[YRI][hapmap]
rs12337927	0.82[AFR][1000 genomes]
rs12340071	1.00[AMR][1000 genomes]
rs12342754	1.00[AMR][1000 genomes]
rs12344521	1.00[AMR][1000 genomes]
rs12345510	1.00[AMR][1000 genomes]
rs12347800	1.00[AMR][1000 genomes]
rs12349363	1.00[AMR][1000 genomes]
rs1411408	1.00[YRI][hapmap]
rs17518268	1.00[YRI][hapmap]
rs28498152	1.00[AMR][1000 genomes]
rs28731505	1.00[AMR][1000 genomes]
rs57295272	1.00[AMR][1000 genomes]
rs7036155	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs72723223	0.82[AFR][1000 genomes]
rs7866489	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72440000-72451400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:72440600-72457600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:72441600-72467200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:72442800-72457600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:72442800-72480200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:72444600-72448800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:72444800-72448800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr9:72445000-72449400	Enhancers	Primary T cells from cord blood	blood
9	chr9:72445400-72448400	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr9:72445400-72450200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr9:72445600-72450400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr9:72445800-72449000	Weak transcription	Fetal Thymus	thymus
13	chr9:72445800-72449200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr9:72445800-72450600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr9:72446600-72448600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr9:72447000-72448600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr9:72447200-72448400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr9:72447200-72448600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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