Variant report

Variant	rs12349548
Chromosome Location	chr9:73561872-73561873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12351255	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13295326	0.90[EUR][1000 genomes]
rs13301216	0.90[EUR][1000 genomes]
rs1337013	0.93[EUR][1000 genomes]
rs1337016	0.97[EUR][1000 genomes]
rs17056011	0.95[EUR][1000 genomes]
rs17056028	0.88[EUR][1000 genomes]
rs17056047	0.97[EUR][1000 genomes]
rs17473012	0.90[EUR][1000 genomes]
rs1932927	0.81[EUR][1000 genomes]
rs34871272	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35095828	0.88[EUR][1000 genomes]
rs35824177	0.97[EUR][1000 genomes]
rs56017015	0.97[EUR][1000 genomes]
rs61193958	0.97[EUR][1000 genomes]
rs67149721	0.88[EUR][1000 genomes]
rs71507017	0.88[EUR][1000 genomes]
rs73468171	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73551800-73562200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:73558200-73562000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:73559400-73562400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:73561200-73562200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:73561400-73563800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:73561800-73562000	Enhancers	NHLF	lung
7	chr9:73561800-73562200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:73561800-73562600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr9:73561800-73562800	Enhancers	Osteobl	bone
10	chr9:73561800-73563000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr9:73561800-73563800	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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