Variant report

Variant	rs17056047
Chromosome Location	chr9:73568035-73568036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12349548	0.97[EUR][1000 genomes]
rs12351255	0.93[EUR][1000 genomes]
rs13295326	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13301216	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1337013	0.95[EUR][1000 genomes]
rs1337016	1.00[EUR][1000 genomes]
rs17056011	0.97[EUR][1000 genomes]
rs17056028	0.91[EUR][1000 genomes]
rs17473012	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1932927	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34871272	0.91[EUR][1000 genomes]
rs35095828	0.91[EUR][1000 genomes]
rs35824177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56017015	1.00[EUR][1000 genomes]
rs61193958	1.00[EUR][1000 genomes]
rs67149721	0.91[EUR][1000 genomes]
rs71507017	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73468171	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73562800-73568200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:73563000-73569000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:73563600-73568600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:73563800-73568600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:73563800-73568600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:73563800-73568600	Weak transcription	HMEC	breast
7	chr9:73563800-73568600	Weak transcription	NHEK	skin
8	chr9:73564000-73569200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:73565800-73568200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:73565800-73568400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:73566600-73568600	Enhancers	Osteobl	bone
12	chr9:73566600-73568800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:73566600-73570800	Enhancers	NHDF-Ad	bronchial
14	chr9:73566800-73570400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:73567000-73571000	Enhancers	HSMM	muscle
16	chr9:73567000-73571000	Enhancers	HSMMtube	muscle
17	chr9:73567200-73568600	Weak transcription	Aorta	Aorta
18	chr9:73567200-73570000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr9:73567200-73571200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:73567400-73568400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:73567600-73568600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:73567600-73568600	Enhancers	NH-A	brain
23	chr9:73567600-73568600	Enhancers	NHLF	lung
24	chr9:73567600-73569000	Weak transcription	Fetal Heart	heart
25	chr9:73567600-73569800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:73568000-73568400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr9:73568000-73568400	Weak transcription	Placenta	Placenta
28	chr9:73568000-73568400	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr9:73568000-73570000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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