Variant report

Variant	rs1337016
Chromosome Location	chr9:73550720-73550721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12349548	0.97[EUR][1000 genomes]
rs12351255	0.93[EUR][1000 genomes]
rs13295326	0.93[EUR][1000 genomes]
rs13301216	0.93[EUR][1000 genomes]
rs1337013	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17056011	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17056028	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17056047	1.00[EUR][1000 genomes]
rs17473012	0.93[EUR][1000 genomes]
rs1932927	0.83[EUR][1000 genomes]
rs34871272	0.91[EUR][1000 genomes]
rs35095828	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35824177	1.00[EUR][1000 genomes]
rs56017015	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61193958	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67149721	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71507017	0.91[EUR][1000 genomes]
rs73468171	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893441	chr9:73486034-73594114	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1043383	chr9:73517062-73556679	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73540400-73550800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr9:73546200-73551600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:73547400-73555200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:73547600-73551000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:73547600-73554200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr9:73547800-73555400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:73548200-73551400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:73548200-73551800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:73548200-73552400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr9:73550000-73551600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:73550600-73551000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr9:73550600-73551800	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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