Variant report

Variant	rs12351388
Chromosome Location	chr9:110466736-110466737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10117620	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10123702	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10123747	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12684877	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12685971	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60514260	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808541	chr9:110444938-110488612	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110463400-110467000	Weak transcription	Fetal Lung	lung
2	chr9:110463600-110466800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:110463600-110468600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr9:110464200-110469800	Weak transcription	Spleen	Spleen
5	chr9:110465400-110468400	Enhancers	Fetal Intestine Large	intestine
6	chr9:110465400-110468400	Enhancers	Fetal Intestine Small	intestine
7	chr9:110466200-110469600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:110466200-110469800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr9:110466200-110474200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr9:110466400-110467400	Weak transcription	NHLF	lung
11	chr9:110466400-110469800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr9:110466600-110466800	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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