Variant report

Variant	rs60514260
Chromosome Location	chr9:110459481-110459482
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10117620	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10123702	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10123747	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10816558	0.85[ASN][1000 genomes]
rs12351388	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12684877	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12685971	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60640360	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs869374	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1808541	chr9:110444938-110488612	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110456400-110463000	Weak transcription	Colon Smooth Muscle	Colon
2	chr9:110456600-110463000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:110456800-110463000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:110457400-110463000	Weak transcription	Fetal Lung	lung
5	chr9:110457800-110460000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr9:110458800-110460400	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr9:110459200-110459800	Enhancers	NHEK	skin
8	chr9:110459200-110461000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:110459400-110459600	Weak transcription	Esophagus	oesophagus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links