Variant report

Variant	rs12352939
Chromosome Location	chr9:101786106-101786107
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101782641..101786481-chr9:101865510..101868655,3	MCF-7	breast:
2	chr9:101782750..101786222-chr9:101835622..101838699,3	K562	blood:
3	chr9:101782750..101786222-chr9:101834554..101837470,3	K562	blood:
4	chr9:101782595..101784230-chr9:101785784..101788203,2	MCF-7	breast:
5	chr9:101783791..101786672-chr9:101794290..101796962,2	K562	blood:
6	chr9:101780306..101785966-chr9:101786034..101790764,8	K562	blood:
7	chr9:101779716..101783952-chr9:101784927..101791325,8	K562	blood:

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10125514	0.82[EUR][1000 genomes]
rs12552765	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16918137	0.84[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2274962	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35934703	0.81[EUR][1000 genomes]
rs3739800	1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs41316954	0.81[ASN][1000 genomes]
rs4743307	0.83[CHD][hapmap]
rs4743309	0.87[MKK][hapmap];0.82[EUR][1000 genomes]
rs4743310	1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60021618	0.81[EUR][1000 genomes]
rs72737281	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528933	chr9:101784777-101788522	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101761600-101814400	Weak transcription	Gastric	stomach
2	chr9:101768800-101787200	Weak transcription	Right Atrium	heart
3	chr9:101769000-101790400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr9:101773000-101793600	Weak transcription	Aorta	Aorta
5	chr9:101776600-101790200	Weak transcription	Fetal Intestine Small	intestine
6	chr9:101777000-101788000	Weak transcription	Esophagus	oesophagus
7	chr9:101779400-101788600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:101781200-101791800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:101782000-101788400	Weak transcription	K562	blood
10	chr9:101782000-101819800	Weak transcription	Colonic Mucosa	Colon
11	chr9:101784400-101786400	Genic enhancers	Stomach Smooth Muscle	stomach
12	chr9:101784600-101786600	Genic enhancers	Fetal Muscle Leg	muscle
13	chr9:101784800-101786400	Enhancers	Primary T cells fromperipheralblood	blood
14	chr9:101784800-101786400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr9:101784800-101786600	Genic enhancers	Fetal Muscle Trunk	muscle
16	chr9:101785000-101786400	Enhancers	Placenta Amnion	Placenta Amnion
17	chr9:101785000-101788000	Weak transcription	Pancreas	Pancrea
18	chr9:101785000-101788200	Weak transcription	Right Ventricle	heart
19	chr9:101785200-101786400	Strong transcription	Duodenum Smooth Muscle	Duodenum
20	chr9:101785200-101786400	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr9:101785200-101786600	Genic enhancers	Adipose Nuclei	Adipose
22	chr9:101785200-101788000	Weak transcription	Left Ventricle	heart
23	chr9:101785400-101786400	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr9:101785600-101786600	Enhancers	Ovary	ovary
25	chr9:101785600-101786600	Enhancers	NHLF	lung
26	chr9:101785600-101787400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:101785600-101788000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr9:101785600-101789000	Weak transcription	Fetal Thymus	thymus
29	chr9:101785800-101786400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:101785800-101786400	Genic enhancers	Fetal Stomach	stomach
31	chr9:101785800-101786400	Enhancers	HSMMtube	muscle
32	chr9:101785800-101787000	Enhancers	Hela-S3	cervix
33	chr9:101786000-101786200	Enhancers	Primary T cells from cord blood	blood
34	chr9:101786000-101786200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr9:101786000-101786400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr9:101786000-101786400	Enhancers	Brain Anterior Caudate	brain
37	chr9:101786000-101786400	Genic enhancers	Colon Smooth Muscle	Colon
38	chr9:101786000-101786400	Enhancers	Placenta	Placenta
39	chr9:101786000-101786400	Enhancers	HSMM	muscle
40	chr9:101786000-101786400	Enhancers	NHDF-Ad	bronchial
41	chr9:101786000-101786400	Enhancers	Osteobl	bone
42	chr9:101786000-101786600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr9:101786000-101788800	Weak transcription	Thymus	Thymus

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