Variant report

Variant	rs2274962
Chromosome Location	chr9:101782836-101782837
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:101782641..101786481-chr9:101865510..101868655,3	MCF-7	breast:
2	chr9:101782750..101786222-chr9:101835622..101838699,3	K562	blood:
3	chr9:101782750..101786222-chr9:101834554..101837470,3	K562	blood:
4	chr9:101782595..101784230-chr9:101785784..101788203,2	MCF-7	breast:
5	chr9:101774409..101777052-chr9:101782515..101785003,2	K562	blood:
6	chr9:101779716..101783952-chr9:101784927..101791325,8	K562	blood:
7	chr9:101781442..101783754-chr9:101790736..101792592,2	MCF-7	breast:
8	chr9:101780306..101785966-chr9:101786034..101790764,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10125514	0.97[EUR][1000 genomes]
rs12352939	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12552765	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35934703	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3739800	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41316954	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743309	0.97[EUR][1000 genomes]
rs4743310	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60021618	0.98[EUR][1000 genomes]
rs72737281	0.85[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101761600-101814400	Weak transcription	Gastric	stomach
2	chr9:101761800-101785200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr9:101768800-101787200	Weak transcription	Right Atrium	heart
4	chr9:101769000-101790400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr9:101773000-101793600	Weak transcription	Aorta	Aorta
6	chr9:101774800-101784600	Strong transcription	Fetal Muscle Leg	muscle
7	chr9:101775400-101784800	Strong transcription	Fetal Muscle Trunk	muscle
8	chr9:101775600-101785200	Strong transcription	Adipose Nuclei	Adipose
9	chr9:101776600-101790200	Weak transcription	Fetal Intestine Small	intestine
10	chr9:101777000-101785600	Weak transcription	Thymus	Thymus
11	chr9:101777000-101788000	Weak transcription	Esophagus	oesophagus
12	chr9:101777400-101785800	Strong transcription	Fetal Stomach	stomach
13	chr9:101777800-101786000	Strong transcription	Colon Smooth Muscle	Colon
14	chr9:101778400-101784200	Weak transcription	Right Ventricle	heart
15	chr9:101779400-101785600	Weak transcription	Ovary	ovary
16	chr9:101779400-101788600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr9:101780000-101783800	Weak transcription	Pancreas	Pancrea
18	chr9:101780000-101784400	Weak transcription	Left Ventricle	heart
19	chr9:101780800-101783200	Enhancers	HSMM	muscle
20	chr9:101781000-101784000	Enhancers	NHDF-Ad	bronchial
21	chr9:101781200-101783000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr9:101781200-101783000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr9:101781200-101783000	Enhancers	HMEC	breast
24	chr9:101781200-101783200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:101781200-101783200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr9:101781200-101784200	Enhancers	NHLF	lung
27	chr9:101781200-101786000	Genic enhancers	Placenta	Placenta
28	chr9:101781200-101791800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:101781400-101783000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr9:101781400-101783400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr9:101781400-101783400	Enhancers	NHEK	skin
32	chr9:101781600-101783400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr9:101781600-101784200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr9:101781800-101783000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr9:101781800-101784600	Enhancers	Placenta Amnion	Placenta Amnion
36	chr9:101781800-101784800	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr9:101782000-101783000	Enhancers	Rectal Smooth Muscle	rectum
38	chr9:101782000-101788400	Weak transcription	K562	blood
39	chr9:101782000-101819800	Weak transcription	Colonic Mucosa	Colon
40	chr9:101782200-101784800	Enhancers	Hela-S3	cervix
41	chr9:101782400-101783600	Genic enhancers	Stomach Smooth Muscle	stomach
42	chr9:101782600-101783000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr9:101782600-101783000	Genic enhancers	HSMMtube	muscle
44	chr9:101782600-101783200	Enhancers	NH-A	brain
45	chr9:101782600-101783400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr9:101782600-101783400	Enhancers	Osteobl	bone
47	chr9:101782600-101784200	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr9:101782800-101783000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr9:101782800-101783000	Enhancers	Brain Anterior Caudate	brain
50	chr9:101782800-101783200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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