Variant report

Variant	rs4743310
Chromosome Location	chr9:101782535-101782536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101774409..101777052-chr9:101782515..101785003,2	K562	blood:
2	chr9:101779716..101783952-chr9:101784927..101791325,8	K562	blood:
3	chr9:101781442..101783754-chr9:101790736..101792592,2	MCF-7	breast:
4	chr9:101780306..101785966-chr9:101786034..101790764,8	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10125514	1.00[CEU][hapmap];0.81[JPT][hapmap];0.98[EUR][1000 genomes]
rs12352939	1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12552765	0.83[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16918137	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2274962	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35934703	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3739800	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41316954	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743309	1.00[CEU][hapmap];0.80[JPT][hapmap];0.98[EUR][1000 genomes]
rs60021618	0.97[EUR][1000 genomes]
rs72737281	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101761600-101814400	Weak transcription	Gastric	stomach
2	chr9:101761800-101785200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr9:101768800-101787200	Weak transcription	Right Atrium	heart
4	chr9:101769000-101790400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr9:101773000-101793600	Weak transcription	Aorta	Aorta
6	chr9:101774800-101784600	Strong transcription	Fetal Muscle Leg	muscle
7	chr9:101775400-101784800	Strong transcription	Fetal Muscle Trunk	muscle
8	chr9:101775600-101785200	Strong transcription	Adipose Nuclei	Adipose
9	chr9:101776600-101790200	Weak transcription	Fetal Intestine Small	intestine
10	chr9:101777000-101785600	Weak transcription	Thymus	Thymus
11	chr9:101777000-101788000	Weak transcription	Esophagus	oesophagus
12	chr9:101777400-101785800	Strong transcription	Fetal Stomach	stomach
13	chr9:101777800-101786000	Strong transcription	Colon Smooth Muscle	Colon
14	chr9:101778400-101784200	Weak transcription	Right Ventricle	heart
15	chr9:101778800-101782600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr9:101779400-101785600	Weak transcription	Ovary	ovary
17	chr9:101779400-101788600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr9:101780000-101783800	Weak transcription	Pancreas	Pancrea
19	chr9:101780000-101784400	Weak transcription	Left Ventricle	heart
20	chr9:101780400-101782600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr9:101780800-101783200	Enhancers	HSMM	muscle
22	chr9:101781000-101784000	Enhancers	NHDF-Ad	bronchial
23	chr9:101781200-101783000	Enhancers	Muscle Satellite Cultured Cells	--
24	chr9:101781200-101783000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr9:101781200-101783000	Enhancers	HMEC	breast
26	chr9:101781200-101783200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:101781200-101783200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr9:101781200-101784200	Enhancers	NHLF	lung
29	chr9:101781200-101786000	Genic enhancers	Placenta	Placenta
30	chr9:101781200-101791800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr9:101781400-101782600	Enhancers	HSMMtube	muscle
32	chr9:101781400-101782800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr9:101781400-101782800	Enhancers	A549	lung
34	chr9:101781400-101783000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr9:101781400-101783400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr9:101781400-101783400	Enhancers	NHEK	skin
37	chr9:101781600-101783400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr9:101781600-101784200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr9:101781800-101782800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr9:101781800-101783000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:101781800-101784600	Enhancers	Placenta Amnion	Placenta Amnion
42	chr9:101781800-101784800	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr9:101782000-101782800	Enhancers	HUVEC	blood vessel
44	chr9:101782000-101783000	Enhancers	Rectal Smooth Muscle	rectum
45	chr9:101782000-101788400	Weak transcription	K562	blood
46	chr9:101782000-101819800	Weak transcription	Colonic Mucosa	Colon
47	chr9:101782200-101784800	Enhancers	Hela-S3	cervix
48	chr9:101782400-101782600	Flanking Active TSS	NH-A	brain
49	chr9:101782400-101782600	Flanking Active TSS	Osteobl	bone
50	chr9:101782400-101782800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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