Variant report

Variant	rs12358283
Chromosome Location	chr10:28182497-28182498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10826357	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10826358	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10826359	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10826360	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10826362	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10826363	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10826364	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10826365	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10826370	0.86[ASN][1000 genomes]
rs11006756	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11006758	0.94[ASN][1000 genomes]
rs11006759	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11006760	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11006761	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11006762	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11006764	0.93[ASN][1000 genomes]
rs11006765	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11006766	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11006767	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11006769	0.90[ASN][1000 genomes]
rs11006779	0.80[ASN][1000 genomes]
rs11006786	0.85[ASN][1000 genomes]
rs11492473	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11595397	0.94[ASN][1000 genomes]
rs11595783	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11596317	0.86[ASN][1000 genomes]
rs11598344	0.86[ASN][1000 genomes]
rs11816757	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12358199	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12772278	0.86[ASN][1000 genomes]
rs12779352	0.83[ASN][1000 genomes]
rs1334719	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1413772	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1419366	0.86[ASN][1000 genomes]
rs1832005	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1931889	0.86[ASN][1000 genomes]
rs1970631	0.86[ASN][1000 genomes]
rs2003192	0.90[ASN][1000 genomes]
rs2065690	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2152018	0.85[EUR][1000 genomes]
rs2152019	0.85[EUR][1000 genomes]
rs2184418	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2297646	0.86[ASN][1000 genomes]
rs2368269	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2368271	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2368272	0.93[ASN][1000 genomes]
rs2368273	0.90[ASN][1000 genomes]
rs2368274	0.94[ASN][1000 genomes]
rs3824590	0.86[ASN][1000 genomes]
rs3952837	0.84[ASN][1000 genomes]
rs4237386	0.86[ASN][1000 genomes]
rs4265508	0.89[ASN][1000 genomes]
rs4420169	0.93[ASN][1000 genomes]
rs4494226	0.86[ASN][1000 genomes]
rs4590766	0.84[ASN][1000 genomes]
rs4600119	0.86[ASN][1000 genomes]
rs4628591	0.85[ASN][1000 genomes]
rs4749267	0.86[EUR][1000 genomes]
rs4749273	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4749274	0.94[ASN][1000 genomes]
rs4749275	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4749276	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4749277	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4749278	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4749279	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4749280	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4749285	0.90[ASN][1000 genomes]
rs6481490	0.91[ASN][1000 genomes]
rs6481491	0.91[ASN][1000 genomes]
rs7070860	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7074562	0.88[ASN][1000 genomes]
rs7077472	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7087095	0.86[ASN][1000 genomes]
rs7089040	0.84[ASN][1000 genomes]
rs7090390	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7094167	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7094542	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7095239	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7095692	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7096964	0.87[EUR][1000 genomes]
rs7099583	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7099871	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7099876	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7100494	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7893462	0.84[ASN][1000 genomes]
rs7896951	0.84[ASN][1000 genomes]
rs7897553	0.90[ASN][1000 genomes]
rs7897889	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7907415	0.86[ASN][1000 genomes]
rs7907500	0.89[ASN][1000 genomes]
rs7924172	0.86[ASN][1000 genomes]
rs880706	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs880707	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs880708	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9663255	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv894987	chr10:28165502-28326775	ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28173600-28183400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:28178800-28188000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:28181200-28182800	Enhancers	Primary T cells from cord blood	blood
4	chr10:28181800-28183000	Enhancers	Fetal Thymus	thymus
5	chr10:28181800-28183200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:28182200-28182600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:28182200-28182800	Enhancers	Fetal Lung	lung
8	chr10:28182200-28183000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:28182200-28183000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:28182200-28183000	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr10:28182200-28183000	Enhancers	Esophagus	oesophagus
12	chr10:28182200-28183000	Enhancers	Fetal Stomach	stomach
13	chr10:28182200-28183000	Enhancers	Rectal Smooth Muscle	rectum
14	chr10:28182200-28183000	Enhancers	Hela-S3	cervix
15	chr10:28182200-28183000	Enhancers	HUVEC	blood vessel
16	chr10:28182400-28182800	Enhancers	Stomach Mucosa	stomach

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