Variant report

Variant	rs2368269
Chromosome Location	chr10:28178419-28178420
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28178111..28179847-chr10:28182667..28184534,2	K562	blood:
2	chr10:28177944..28180786-chr10:28185411..28187145,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10826357	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10826358	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10826359	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10826360	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10826362	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10826363	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10826364	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10826365	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11006756	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11006759	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11006760	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11006761	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11006762	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11006765	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11006766	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11006767	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11492473	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11595783	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11816757	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12358199	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12358283	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1334719	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1413772	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1832005	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2065690	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2152018	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2152019	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2184418	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2368271	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4749267	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4749273	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4749275	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4749276	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4749277	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4749278	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4749279	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4749280	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7070860	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7077472	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7090390	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7094167	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7094542	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7095239	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7095692	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7096964	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7099583	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7099871	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7099876	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7100494	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7897889	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs880706	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs880707	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs880708	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv894987	chr10:28165502-28326775	ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28161000-28181800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:28173600-28183400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:28176200-28180200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:28178400-28179200	Enhancers	Fetal Thymus	thymus

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