Variant report

Variant	rs11006756
Chromosome Location	chr10:28175307-28175308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10826357	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10826358	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10826359	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10826360	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10826362	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10826363	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10826364	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10826365	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11006759	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11006760	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11006761	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11006762	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11006765	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11006766	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11006767	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11492473	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11595783	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11816757	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12358199	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12358283	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1334719	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1413772	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1832005	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2065690	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2152018	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2152019	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2184418	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2368269	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2368271	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4749266	0.85[CEU][hapmap]
rs4749267	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4749273	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4749275	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4749276	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4749277	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4749278	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4749279	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4749280	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7070860	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7077472	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7090390	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7094167	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7094542	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7095239	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7095692	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7096964	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7099583	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7099871	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7099876	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7100494	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7897889	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs880706	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs880707	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs880708	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv894987	chr10:28165502-28326775	ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv3432203	chr10:28173796-28175994	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28161000-28181800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:28173600-28183400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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