Variant report

Variant	rs12360807
Chromosome Location	chr11:94077690-94077691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10831219	0.81[EUR][1000 genomes]
rs10831223	0.84[ASN][1000 genomes]
rs10831228	1.00[CEU][hapmap];0.87[GIH][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs10831235	0.89[MEX][hapmap]
rs11020768	0.94[CHD][hapmap];0.80[GIH][hapmap];0.84[ASN][1000 genomes]
rs11020778	0.89[EUR][1000 genomes]
rs11020780	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs11528970	0.81[EUR][1000 genomes]
rs12360870	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12804797	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13447710	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2005496	0.85[EUR][1000 genomes]
rs28817619	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35311697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3740868	0.87[GIH][hapmap];0.89[MEX][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523083	chr11:93962121-94150790	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832233	chr11:93981434-94158471	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12360807	SCARNA9	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94077200-94079400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr11:94077400-94077800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:94077600-94079800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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