Variant report

Variant	rs10831235
Chromosome Location	chr11:94240767-94240768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:94240706-94240938	HepG2	liver:	n/a	chr11:94240767-94240778
2	FOS	chr11:94240722-94241089	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr11:94240722-94241060	MCF10A-Er-Src	breast:	n/a	n/a
4	CEBPB	chr11:94240735-94241050	K562	blood:	n/a	chr11:94240767-94240778
5	MYC	chr11:94240685-94240863	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr11:94240720-94241092	MCF10A-Er-Src	breast:	n/a	n/a
7	CEBPB	chr11:94240611-94240964	MCF-7	breast:	n/a	chr11:94240767-94240778
8	CEBPB	chr11:94240754-94241064	K562	blood:	n/a	chr11:94240767-94240778
9	MYC	chr11:94240745-94241062	MCF10A-Er-Src	breast:	n/a	n/a
10	FOS	chr11:94240749-94241062	MCF10A-Er-Src	breast:	n/a	n/a
11	CEBPB	chr11:94240749-94241093	IMR90	lung:	n/a	chr11:94240767-94240778
12	STAT3	chr11:94240746-94241124	MCF10A-Er-Src	breast:	n/a	n/a
13	CEBPB	chr11:94240733-94241016	Hela-S3	cervix:	n/a	chr11:94240767-94240778

Variant related genes	Relation type
LINC01171	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10501815	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10765682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10831219	0.80[ASN][1000 genomes]
rs10831223	0.82[EUR][1000 genomes]
rs10831224	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10831228	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs10831229	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10831230	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10831232	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10831234	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020768	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.89[MEX][hapmap]
rs11020773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.89[MEX][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11020778	0.89[ASN][1000 genomes]
rs11020779	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11020780	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs11020789	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11020798	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs11020805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020806	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020807	0.96[ASN][1000 genomes]
rs11020808	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.85[ASN][1000 genomes]
rs11020810	0.85[ASN][1000 genomes]
rs11020813	0.85[ASN][1000 genomes]
rs11020827	0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs11517521	0.87[ASN][1000 genomes]
rs11528970	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs11605546	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11825497	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12222194	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12222920	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12224897	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12360870	0.88[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs13447710	0.88[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs13447717	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13447719	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs2005496	0.93[ASN][1000 genomes]
rs3740868	0.88[CHB][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];0.80[ASN][1000 genomes]
rs3819119	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7117042	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7119285	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7126861	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7126985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7947058	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94227800-94245200	Weak transcription	Gastric	stomach
2	chr11:94228000-94245000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:94228000-94245200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:94228000-94245800	Weak transcription	Stomach Mucosa	stomach
5	chr11:94228400-94245200	Weak transcription	Fetal Stomach	stomach
6	chr11:94231600-94245200	Weak transcription	Esophagus	oesophagus
7	chr11:94232400-94245000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:94232600-94245200	Weak transcription	NHLF	lung
9	chr11:94232800-94245200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:94233000-94245200	Weak transcription	Psoas Muscle	Psoas
11	chr11:94233400-94245200	Weak transcription	Fetal Intestine Large	intestine
12	chr11:94233600-94240800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:94233600-94245000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr11:94233600-94245000	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:94233600-94245000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:94233600-94245200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:94233600-94245200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr11:94233600-94245200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:94233600-94245200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:94233600-94245200	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:94233600-94245200	Weak transcription	Ovary	ovary
22	chr11:94233600-94245200	Weak transcription	Spleen	Spleen
23	chr11:94233600-94245200	Weak transcription	NHDF-Ad	bronchial
24	chr11:94233600-94245400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:94233800-94245200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr11:94233800-94245200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr11:94234000-94245000	Weak transcription	Fetal Kidney	kidney
28	chr11:94234000-94245000	Weak transcription	NHEK	skin
29	chr11:94234000-94245200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr11:94234000-94245200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr11:94234200-94245000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr11:94234200-94245200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:94234200-94245200	Weak transcription	Brain Substantia Nigra	brain
34	chr11:94234200-94245200	Weak transcription	Duodenum Mucosa	Duodenum
35	chr11:94234200-94245200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr11:94234200-94245200	Weak transcription	Stomach Smooth Muscle	stomach
37	chr11:94234400-94245000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:94234400-94245200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr11:94235000-94245000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:94235200-94244800	Weak transcription	Liver	Liver
41	chr11:94235400-94241000	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr11:94235400-94245000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:94235400-94245000	Weak transcription	Brain Cingulate Gyrus	brain
44	chr11:94235400-94245200	Weak transcription	Placenta	Placenta
45	chr11:94235600-94241200	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr11:94235600-94242000	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr11:94235600-94243200	Weak transcription	Primary B cells from cord blood	blood
48	chr11:94235600-94245000	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr11:94235600-94245200	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr11:94235600-94245200	Weak transcription	Adipose Nuclei	Adipose

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