Variant report

Variant	rs11020779
Chromosome Location	chr11:94156413-94156414
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94151626..94153419-chr11:94155927..94158311,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10501815	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10765682	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10831219	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10831223	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10831224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10831228	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10831229	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10831230	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10831232	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10831234	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10831235	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11020768	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11020773	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11020778	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020780	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020789	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11020798	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11020805	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11020806	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11020807	0.86[ASN][1000 genomes]
rs11020808	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11020827	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs11517521	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11528970	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11605546	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11825497	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12222194	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12222920	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12224897	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12360870	1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12365123	0.95[EUR][1000 genomes]
rs13447710	1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13447717	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13447719	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs2005496	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3740868	0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3819119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7117042	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7119285	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7126861	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7126985	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7947058	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832233	chr11:93981434-94158471	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	esv1795745	chr11:94144987-94227993	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv1798271	chr11:94144987-94227993	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94135200-94161400	Weak transcription	Placenta	Placenta
2	chr11:94135200-94162200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:94138600-94162200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:94141800-94156600	Weak transcription	Spleen	Spleen
5	chr11:94142400-94161200	Weak transcription	Brain Anterior Caudate	brain
6	chr11:94144200-94169200	Weak transcription	Aorta	Aorta
7	chr11:94145000-94161800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr11:94145400-94162000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr11:94146400-94161200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:94146800-94156800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:94146800-94156800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:94146800-94156800	Weak transcription	Fetal Lung	lung
13	chr11:94146800-94157000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:94146800-94160800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr11:94146800-94161400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:94147000-94156600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr11:94147200-94156600	Weak transcription	Right Ventricle	heart
18	chr11:94147200-94162200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr11:94147400-94161000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:94147600-94161000	Weak transcription	Brain Hippocampus Middle	brain
21	chr11:94147600-94162000	Weak transcription	HepG2	liver
22	chr11:94147800-94161400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:94149000-94156800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:94149000-94166600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr11:94149200-94161000	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr11:94149400-94156600	Weak transcription	Fetal Brain Female	brain
27	chr11:94149600-94161600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:94149600-94169600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr11:94150000-94161000	Weak transcription	Fetal Brain Male	brain
30	chr11:94150200-94156600	Weak transcription	Esophagus	oesophagus
31	chr11:94150200-94162600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr11:94150200-94167200	Weak transcription	NH-A	brain
33	chr11:94150600-94161600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr11:94151000-94157000	Weak transcription	Colonic Mucosa	Colon
35	chr11:94151200-94161000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr11:94151200-94170800	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr11:94151400-94178200	Weak transcription	HUVEC	blood vessel
38	chr11:94151800-94168400	Weak transcription	Pancreas	Pancrea
39	chr11:94152200-94158800	Strong transcription	Liver	Liver
40	chr11:94152200-94206200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr11:94152400-94162400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:94152800-94157200	Weak transcription	NHDF-Ad	bronchial
43	chr11:94153000-94161400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr11:94153000-94167000	Weak transcription	K562	blood
45	chr11:94153200-94156800	Weak transcription	HSMM	muscle
46	chr11:94153200-94161200	Weak transcription	Colon Smooth Muscle	Colon
47	chr11:94153200-94177200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr11:94153400-94157000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:94153400-94159000	Weak transcription	A549	lung
50	chr11:94153400-94161400	Weak transcription	Brain Substantia Nigra	brain

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