Variant report

Variant	rs11020806
Chromosome Location	chr11:94243972-94243973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94232358..94234196-chr11:94243967..94245668,2	K562	blood:
2	chr11:94232199..94234822-chr11:94243193..94245619,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10501815	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10765682	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10831219	0.80[ASN][1000 genomes]
rs10831223	0.82[EUR][1000 genomes]
rs10831224	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10831228	0.89[ASN][1000 genomes]
rs10831229	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10831230	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10831232	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10831234	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10831235	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020768	1.00[CEU][hapmap]
rs11020773	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11020778	0.89[ASN][1000 genomes]
rs11020779	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11020780	0.89[ASN][1000 genomes]
rs11020789	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11020798	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11020805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020807	0.96[ASN][1000 genomes]
rs11020808	0.85[ASN][1000 genomes]
rs11020810	0.85[ASN][1000 genomes]
rs11020813	0.85[ASN][1000 genomes]
rs11020827	0.87[ASN][1000 genomes]
rs11517521	0.87[ASN][1000 genomes]
rs11528970	0.80[ASN][1000 genomes]
rs11605546	0.85[ASN][1000 genomes]
rs11825497	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12222194	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12222920	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12224897	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12360870	0.82[CEU][hapmap];0.85[ASN][1000 genomes]
rs13447710	0.82[CEU][hapmap];0.85[ASN][1000 genomes]
rs13447717	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13447719	0.81[ASN][1000 genomes]
rs2005496	0.93[ASN][1000 genomes]
rs3740868	0.80[ASN][1000 genomes]
rs3819119	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7117042	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7119285	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7126861	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7126985	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7947058	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94227800-94245200	Weak transcription	Gastric	stomach
2	chr11:94228000-94245000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:94228000-94245200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:94228000-94245800	Weak transcription	Stomach Mucosa	stomach
5	chr11:94228400-94245200	Weak transcription	Fetal Stomach	stomach
6	chr11:94231600-94245200	Weak transcription	Esophagus	oesophagus
7	chr11:94232400-94245000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:94232600-94245200	Weak transcription	NHLF	lung
9	chr11:94232800-94245200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:94233000-94245200	Weak transcription	Psoas Muscle	Psoas
11	chr11:94233400-94245200	Weak transcription	Fetal Intestine Large	intestine
12	chr11:94233600-94245000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr11:94233600-94245000	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:94233600-94245000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:94233600-94245200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:94233600-94245200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:94233600-94245200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:94233600-94245200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:94233600-94245200	Weak transcription	Colon Smooth Muscle	Colon
20	chr11:94233600-94245200	Weak transcription	Ovary	ovary
21	chr11:94233600-94245200	Weak transcription	Spleen	Spleen
22	chr11:94233600-94245200	Weak transcription	NHDF-Ad	bronchial
23	chr11:94233600-94245400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr11:94233800-94245200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:94233800-94245200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr11:94234000-94245000	Weak transcription	Fetal Kidney	kidney
27	chr11:94234000-94245000	Weak transcription	NHEK	skin
28	chr11:94234000-94245200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr11:94234000-94245200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr11:94234200-94245000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr11:94234200-94245200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:94234200-94245200	Weak transcription	Brain Substantia Nigra	brain
33	chr11:94234200-94245200	Weak transcription	Duodenum Mucosa	Duodenum
34	chr11:94234200-94245200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr11:94234200-94245200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr11:94234400-94245000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:94234400-94245200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr11:94235000-94245000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr11:94235200-94244800	Weak transcription	Liver	Liver
40	chr11:94235400-94245000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr11:94235400-94245000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr11:94235400-94245200	Weak transcription	Placenta	Placenta
43	chr11:94235600-94245000	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr11:94235600-94245200	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr11:94235600-94245200	Weak transcription	Adipose Nuclei	Adipose
46	chr11:94235600-94245200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr11:94235600-94245200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr11:94235800-94244000	Weak transcription	Brain Anterior Caudate	brain
49	chr11:94241000-94245200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:94241200-94245000	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links