Variant report

Variant	rs13447717
Chromosome Location	chr11:94169451-94169452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10501815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10765682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831219	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10831223	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10831224	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10831228	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10831229	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10831232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831234	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10831235	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11020768	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11020773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11020778	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11020779	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11020780	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11020789	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11020805	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11020806	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11020807	0.91[ASN][1000 genomes]
rs11020808	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11020827	0.86[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs11517521	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11528970	1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11605546	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11825497	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12222194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12222920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12224897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360870	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12365123	0.95[EUR][1000 genomes]
rs13447710	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13447719	0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs2005496	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3740868	0.88[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3819119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117042	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7119285	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7126861	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947058	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795745	chr11:94144987-94227993	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv1798271	chr11:94144987-94227993	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94149600-94169600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr11:94151200-94170800	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr11:94151400-94178200	Weak transcription	HUVEC	blood vessel
4	chr11:94152200-94206200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:94153200-94177200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:94154400-94183600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr11:94155000-94170200	Strong transcription	Primary T cells from cord blood	blood
8	chr11:94155000-94175000	Strong transcription	Primary B cells from peripheral blood	blood
9	chr11:94156600-94175000	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr11:94157400-94194200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:94157400-94216600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:94157400-94226200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:94157600-94178200	Weak transcription	Colonic Mucosa	Colon
14	chr11:94157600-94182200	Weak transcription	Osteobl	bone
15	chr11:94157600-94226400	Weak transcription	Esophagus	oesophagus
16	chr11:94157800-94182200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:94161000-94183000	Strong transcription	Dnd41	blood
18	chr11:94161200-94172200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr11:94161400-94170400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr11:94162000-94170000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:94162800-94170000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:94162800-94176400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:94162800-94216400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:94162800-94225800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:94163000-94170800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr11:94163000-94171600	Weak transcription	Fetal Heart	heart
27	chr11:94163000-94182400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:94163000-94186000	Weak transcription	Fetal Brain Male	brain
29	chr11:94163000-94192800	Weak transcription	HSMMtube	muscle
30	chr11:94163000-94199200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr11:94163000-94206000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:94163000-94207200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr11:94163200-94177200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr11:94163200-94179000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr11:94163400-94169600	Weak transcription	HepG2	liver
36	chr11:94163400-94221000	Weak transcription	Psoas Muscle	Psoas
37	chr11:94164000-94169800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:94164400-94170000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr11:94164400-94170000	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr11:94164400-94170200	Strong transcription	Primary B cells from cord blood	blood
41	chr11:94164800-94170000	Strong transcription	Primary hematopoietic stem cells	blood
42	chr11:94164800-94170200	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr11:94165200-94169800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr11:94165400-94170000	Strong transcription	Left Ventricle	heart
45	chr11:94165600-94170600	Strong transcription	Duodenum Mucosa	Duodenum
46	chr11:94165800-94170000	Strong transcription	Liver	Liver
47	chr11:94166000-94170400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr11:94166200-94170000	Strong transcription	Adipose Nuclei	Adipose
49	chr11:94166200-94170000	Strong transcription	Fetal Muscle Leg	muscle
50	chr11:94166200-94170000	Strong transcription	Fetal Thymus	thymus

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