Variant report

Variant	rs10831230
Chromosome Location	chr11:94193648-94193649
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10501815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10765682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10831219	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10831223	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10831224	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10831228	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10831229	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10831232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10831234	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10831235	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11020768	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11020773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11020778	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11020779	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11020780	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11020789	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11020805	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11020806	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11020807	0.89[ASN][1000 genomes]
rs11020808	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11020827	0.86[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs11517521	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11528970	1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11605546	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11825497	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12222194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12222920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12224897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12360870	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12365123	0.95[EUR][1000 genomes]
rs13447710	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13447717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13447719	0.86[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs2005496	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3740868	0.88[CHB][hapmap];0.91[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3819119	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7117042	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7119285	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7126861	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7126985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7947058	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795745	chr11:94144987-94227993	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv1798271	chr11:94144987-94227993	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv1797582	chr11:94182992-94227993	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
4	esv1800372	chr11:94182992-94227993	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94152200-94206200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:94157400-94194200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:94157400-94216600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:94157400-94226200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:94157600-94226400	Weak transcription	Esophagus	oesophagus
6	chr11:94162800-94216400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:94162800-94225800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:94163000-94199200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:94163000-94206000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:94163000-94207200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:94163400-94221000	Weak transcription	Psoas Muscle	Psoas
12	chr11:94166600-94216400	Weak transcription	Gastric	stomach
13	chr11:94166800-94202200	Weak transcription	Stomach Mucosa	stomach
14	chr11:94167200-94206000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:94167400-94226400	Weak transcription	Small Intestine	intestine
16	chr11:94167600-94206000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:94169800-94199000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:94169800-94215400	Weak transcription	Brain Angular Gyrus	brain
19	chr11:94170000-94194200	Weak transcription	Spleen	Spleen
20	chr11:94178400-94221600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:94179000-94226000	Weak transcription	Colonic Mucosa	Colon
22	chr11:94179200-94199000	Weak transcription	Fetal Brain Female	brain
23	chr11:94179200-94200000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr11:94179400-94206200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr11:94180000-94217600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:94180400-94199000	Weak transcription	Brain Germinal Matrix	brain
27	chr11:94180600-94202800	Weak transcription	Brain Anterior Caudate	brain
28	chr11:94180600-94225800	Weak transcription	Brain Substantia Nigra	brain
29	chr11:94180800-94194200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr11:94180800-94194200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr11:94180800-94198800	Weak transcription	Thymus	Thymus
32	chr11:94180800-94212600	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:94180800-94215800	Weak transcription	Lung	lung
34	chr11:94181000-94226400	Weak transcription	Pancreas	Pancrea
35	chr11:94181800-94215800	Weak transcription	Fetal Intestine Small	intestine
36	chr11:94183000-94205600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:94183200-94222200	Weak transcription	HMEC	breast
38	chr11:94183600-94219800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr11:94183600-94225800	Weak transcription	NHLF	lung
40	chr11:94183800-94196000	Weak transcription	Osteobl	bone
41	chr11:94184400-94225800	Weak transcription	NHDF-Ad	bronchial
42	chr11:94185600-94194600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:94185800-94195400	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr11:94186000-94194600	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr11:94186200-94194400	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr11:94186400-94195200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:94186600-94199800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr11:94187400-94194800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr11:94188400-94194600	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr11:94188400-94195800	Strong transcription	Dnd41	blood

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