Variant report

Variant	rs11605546
Chromosome Location	chr11:94261280-94261281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94260267..94263157-chr11:94276401..94278483,2	K562	blood:
2	chr11:94260267..94262200-chr11:94276599..94278483,2	K562	blood:

Variant related genes	Relation type
ENSG00000134627	Chromatin interaction
ENSG00000196371	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10501815	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap]
rs10765682	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap]
rs10831224	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs10831228	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap]
rs10831230	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10831232	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10831234	0.83[ASN][1000 genomes]
rs10831235	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11020768	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs11020773	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap]
rs11020779	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11020780	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap]
rs11020789	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11020798	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11020805	0.85[ASN][1000 genomes]
rs11020806	0.85[ASN][1000 genomes]
rs11020807	0.82[ASN][1000 genomes]
rs11020808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020810	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020813	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020827	0.86[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs11528970	1.00[CHB][hapmap]
rs11825497	0.83[ASN][1000 genomes]
rs12222194	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12222920	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12224897	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12360870	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs13447710	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs13447717	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs13447719	0.86[CHB][hapmap]
rs3740868	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs61545930	0.90[ASN][1000 genomes]
rs7126985	1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11605546	ANKRD49	cis	cerebellum	SCAN
rs11605546	MRE11A	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94246000-94267400	Weak transcription	Aorta	Aorta
2	chr11:94254400-94261800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:94257400-94262400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:94259000-94262600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:94259200-94265400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr11:94259600-94266600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:94260200-94261600	Weak transcription	HMEC	breast
8	chr11:94260200-94268800	Weak transcription	Fetal Intestine Small	intestine
9	chr11:94260400-94261600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:94260600-94261800	Weak transcription	NHEK	skin
11	chr11:94260600-94269400	Weak transcription	Osteobl	bone
12	chr11:94260800-94261800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr11:94261200-94261600	Enhancers	HSMMtube	muscle

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