Variant report

Variant	rs11020813
Chromosome Location	chr11:94267176-94267177
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10501815	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap]
rs10765682	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap]
rs10831224	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs10831228	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap]
rs10831230	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10831232	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10831234	0.83[ASN][1000 genomes]
rs10831235	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11020768	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs11020773	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap]
rs11020779	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11020780	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap]
rs11020789	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11020798	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11020805	0.85[ASN][1000 genomes]
rs11020806	0.85[ASN][1000 genomes]
rs11020807	0.82[ASN][1000 genomes]
rs11020808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020810	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020827	0.86[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs11528970	1.00[CHB][hapmap]
rs11605546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825497	0.83[ASN][1000 genomes]
rs12222194	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12222920	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12224897	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12360870	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs13447710	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs13447717	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs13447719	0.86[CHB][hapmap]
rs13447733	0.82[YRI][hapmap]
rs3740868	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs61545930	0.90[ASN][1000 genomes]
rs7126985	1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11020813	MRE11A	cis	cerebellum	SCAN
rs11020813	ANKRD49	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94246000-94267400	Weak transcription	Aorta	Aorta
2	chr11:94260200-94268800	Weak transcription	Fetal Intestine Small	intestine
3	chr11:94260600-94269400	Weak transcription	Osteobl	bone
4	chr11:94262600-94269600	Weak transcription	HSMMtube	muscle
5	chr11:94266200-94267800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:94266400-94267200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:94266400-94267400	Enhancers	Adipose Nuclei	Adipose
8	chr11:94266400-94267400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr11:94266400-94268000	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr11:94266400-94271200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr11:94266600-94267400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr11:94266600-94268000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:94266600-94268600	Weak transcription	Stomach Mucosa	stomach
14	chr11:94266800-94267600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr11:94266800-94267600	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr11:94266800-94267800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:94267000-94267200	Enhancers	Fetal Intestine Large	intestine
18	chr11:94267000-94267400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:94267000-94268800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr11:94267000-94269200	Weak transcription	Rectal Mucosa Donor 29	rectum

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