Variant report

Variant	rs10831234
Chromosome Location	chr11:94233187-94233188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94208946..94211928-chr11:94232056..94233967,2	MCF-7	breast:
2	chr11:94225979..94229384-chr11:94230397..94235421,9	K562	blood:
3	chr11:94232199..94234822-chr11:94243193..94245619,2	K562	blood:
4	chr11:94232358..94234196-chr11:94243967..94245668,2	K562	blood:
5	chr11:94225901..94228925-chr11:94232814..94235568,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000020922	Chromatin interaction
ENSG00000168876	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10501815	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10765682	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10831219	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10831223	0.92[EUR][1000 genomes]
rs10831224	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10831228	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10831229	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10831230	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10831232	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10831235	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020768	0.89[EUR][1000 genomes]
rs11020773	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11020778	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11020779	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11020780	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11020789	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020805	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020806	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020807	0.94[ASN][1000 genomes]
rs11020808	0.83[ASN][1000 genomes]
rs11020810	0.83[ASN][1000 genomes]
rs11020813	0.83[ASN][1000 genomes]
rs11020827	0.85[ASN][1000 genomes]
rs11517521	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11528970	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11605546	0.83[ASN][1000 genomes]
rs11825497	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12222194	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12222920	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12224897	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12360870	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12365123	0.87[EUR][1000 genomes]
rs13447710	0.86[ASN][1000 genomes]
rs13447717	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13447719	0.83[ASN][1000 genomes]
rs2005496	0.94[ASN][1000 genomes]
rs3740868	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3819119	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7117042	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7119285	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7126861	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7126985	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7947058	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94227600-94233400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:94227600-94234800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:94227800-94235400	Weak transcription	Pancreas	Pancrea
4	chr11:94227800-94236400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:94227800-94237000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:94227800-94237000	Weak transcription	Aorta	Aorta
7	chr11:94227800-94238400	Weak transcription	Small Intestine	intestine
8	chr11:94227800-94238800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:94227800-94245200	Weak transcription	Gastric	stomach
10	chr11:94228000-94235400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:94228000-94245000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:94228000-94245200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:94228000-94245800	Weak transcription	Stomach Mucosa	stomach
14	chr11:94228400-94245200	Weak transcription	Fetal Stomach	stomach
15	chr11:94228600-94233800	Weak transcription	Fetal Intestine Small	intestine
16	chr11:94228600-94235200	Weak transcription	A549	lung
17	chr11:94229200-94233600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:94229200-94233600	Strong transcription	Dnd41	blood
19	chr11:94229600-94233600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:94229600-94235600	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr11:94229800-94233600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:94229800-94233800	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr11:94229800-94234000	Strong transcription	Fetal Thymus	thymus
24	chr11:94229800-94234200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:94229800-94234200	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr11:94229800-94234200	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr11:94229800-94234400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:94229800-94234400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:94229800-94234600	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr11:94229800-94235000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:94229800-94235200	Strong transcription	Liver	Liver
32	chr11:94229800-94235400	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr11:94229800-94235400	Strong transcription	Primary T cells from cord blood	blood
34	chr11:94229800-94235400	Strong transcription	Primary hematopoietic stem cells	blood
35	chr11:94229800-94235400	Strong transcription	Placenta	Placenta
36	chr11:94229800-94235600	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr11:94229800-94235600	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr11:94229800-94235600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:94229800-94235600	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr11:94229800-94236200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:94230000-94233400	Strong transcription	Fetal Intestine Large	intestine
42	chr11:94230000-94233600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr11:94230000-94233600	Strong transcription	Ovary	ovary
44	chr11:94230000-94233600	Strong transcription	HSMM	muscle
45	chr11:94230000-94233600	Strong transcription	NHDF-Ad	bronchial
46	chr11:94230000-94233800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr11:94230000-94234000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr11:94230000-94234000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr11:94230000-94234000	Strong transcription	HMEC	breast
50	chr11:94230000-94234000	Strong transcription	NHEK	skin

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