Variant report

Variant	rs2005496
Chromosome Location	chr11:94177318-94177319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94169718..94171277-chr11:94176565..94179417,2	K562	blood:
2	chr11:94170626..94172978-chr11:94174814..94177499,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10501815	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10765682	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10831219	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10831223	0.85[EUR][1000 genomes]
rs10831224	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10831228	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10831229	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10831230	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10831232	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10831234	0.94[ASN][1000 genomes]
rs10831235	0.93[ASN][1000 genomes]
rs11020768	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11020773	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11020778	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020779	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11020780	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020789	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020805	0.93[ASN][1000 genomes]
rs11020806	0.93[ASN][1000 genomes]
rs11020807	0.89[ASN][1000 genomes]
rs11020827	0.80[ASN][1000 genomes]
rs11517521	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11528970	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11825497	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12222194	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12222920	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12224897	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12360807	0.85[EUR][1000 genomes]
rs12360870	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12365123	0.80[EUR][1000 genomes]
rs12804797	0.85[EUR][1000 genomes]
rs13447710	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13447717	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13447719	0.85[ASN][1000 genomes]
rs28817619	0.85[EUR][1000 genomes]
rs35311697	0.85[EUR][1000 genomes]
rs3740868	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3819119	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7117042	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7119285	0.86[ASN][1000 genomes]
rs7126861	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7126985	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7947058	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795745	chr11:94144987-94227993	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv1798271	chr11:94144987-94227993	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94151400-94178200	Weak transcription	HUVEC	blood vessel
2	chr11:94152200-94206200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:94154400-94183600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr11:94157400-94194200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:94157400-94216600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:94157400-94226200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:94157600-94178200	Weak transcription	Colonic Mucosa	Colon
8	chr11:94157600-94182200	Weak transcription	Osteobl	bone
9	chr11:94157600-94226400	Weak transcription	Esophagus	oesophagus
10	chr11:94157800-94182200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr11:94161000-94183000	Strong transcription	Dnd41	blood
12	chr11:94162800-94216400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:94162800-94225800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:94163000-94182400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:94163000-94186000	Weak transcription	Fetal Brain Male	brain
16	chr11:94163000-94192800	Weak transcription	HSMMtube	muscle
17	chr11:94163000-94199200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:94163000-94206000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:94163000-94207200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:94163200-94179000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:94163400-94221000	Weak transcription	Psoas Muscle	Psoas
22	chr11:94166400-94179800	Weak transcription	NHEK	skin
23	chr11:94166600-94216400	Weak transcription	Gastric	stomach
24	chr11:94166800-94202200	Weak transcription	Stomach Mucosa	stomach
25	chr11:94167200-94206000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr11:94167400-94226400	Weak transcription	Small Intestine	intestine
27	chr11:94167600-94178200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:94167600-94206000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr11:94168000-94178200	Weak transcription	NH-A	brain
30	chr11:94168400-94178200	Weak transcription	Fetal Lung	lung
31	chr11:94168600-94182400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:94168800-94180200	Weak transcription	Thymus	Thymus
33	chr11:94168800-94191000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:94169000-94177600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:94169600-94178400	Weak transcription	Pancreas	Pancrea
36	chr11:94169600-94178600	Weak transcription	Fetal Intestine Small	intestine
37	chr11:94169800-94177400	Weak transcription	HMEC	breast
38	chr11:94169800-94178200	Weak transcription	Fetal Brain Female	brain
39	chr11:94169800-94178800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr11:94169800-94179000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:94169800-94199000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr11:94169800-94215400	Weak transcription	Brain Angular Gyrus	brain
43	chr11:94170000-94177400	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr11:94170000-94178200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr11:94170000-94178800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr11:94170000-94178800	Weak transcription	Brain Anterior Caudate	brain
47	chr11:94170000-94178800	Weak transcription	HepG2	liver
48	chr11:94170000-94180000	Weak transcription	Colon Smooth Muscle	Colon
49	chr11:94170000-94180400	Weak transcription	Lung	lung
50	chr11:94170000-94182000	Weak transcription	NHDF-Ad	bronchial

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