Variant report

Variant	rs11020808
Chromosome Location	chr11:94256359-94256360
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94252606..94260040-chr11:94275780..94279036,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196371	Chromatin interaction
ENSG00000134627	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10501815	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];1.00[MKK][hapmap]
rs10765682	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap]
rs10831224	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs10831228	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap]
rs10831230	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10831232	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10831234	0.83[ASN][1000 genomes]
rs10831235	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.85[ASN][1000 genomes]
rs11020768	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs11020773	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap]
rs11020779	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11020780	1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap]
rs11020789	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs11020798	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11020805	0.85[ASN][1000 genomes]
rs11020806	0.85[ASN][1000 genomes]
rs11020807	0.82[ASN][1000 genomes]
rs11020810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020813	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020827	0.86[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs11528970	1.00[CHB][hapmap]
rs11605546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825497	0.83[ASN][1000 genomes]
rs12222194	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12222920	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12224897	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12360870	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs13447710	0.88[CHB][hapmap];0.90[JPT][hapmap]
rs13447717	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs13447719	0.86[CHB][hapmap]
rs13447725	1.00[YRI][hapmap]
rs13447728	1.00[YRI][hapmap]
rs13447731	1.00[YRI][hapmap]
rs13447742	1.00[YRI][hapmap]
rs13447755	1.00[YRI][hapmap]
rs13447758	1.00[YRI][hapmap]
rs1805362	1.00[YRI][hapmap]
rs3740868	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs61545930	0.90[ASN][1000 genomes]
rs7126985	1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11020808	MRE11A	cis	cerebellum	SCAN
rs11020808	ANKRD49	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94246000-94267400	Weak transcription	Aorta	Aorta
2	chr11:94246800-94259000	Weak transcription	Stomach Mucosa	stomach
3	chr11:94247200-94258800	Weak transcription	Fetal Intestine Small	intestine
4	chr11:94253200-94257000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:94253400-94258800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr11:94253600-94258800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr11:94254400-94261800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links