Variant report

Variant	rs12362958
Chromosome Location	chr11:64210335-64210336
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10897503	0.82[EUR][1000 genomes]
rs1662189	0.82[AMR][1000 genomes]
rs28680814	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4930353	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs548333	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs562560	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs564163	0.82[AMR][1000 genomes]
rs577304	0.83[AMR][1000 genomes]
rs61884054	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs653565	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs653578	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7119252	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs72929971	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv555194	chr11:64189110-64238023	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv3431374	chr11:64209731-64212252	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64208000-64212400	Weak transcription	Spleen	Spleen
2	chr11:64208400-64211600	Enhancers	Fetal Brain Male	brain
3	chr11:64208400-64212400	Weak transcription	Placenta	Placenta
4	chr11:64208400-64215800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:64209000-64210800	Enhancers	Primary B cells from peripheral blood	blood
6	chr11:64209400-64210400	Weak transcription	Fetal Brain Female	brain
7	chr11:64209800-64212000	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:64209800-64212400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:64209800-64215400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:64209800-64215800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:64210000-64211800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr11:64210000-64212400	Weak transcription	GM12878-XiMat	blood
13	chr11:64210000-64213000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr11:64210200-64215000	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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