Variant report

Variant	rs12362983
Chromosome Location	chr11:106567602-106567603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10502076	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10890563	0.83[AMR][1000 genomes]
rs11211846	0.89[AMR][1000 genomes]
rs11211859	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11211862	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11211867	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11211872	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12146694	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12365612	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12791433	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17105932	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17105964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2298507	1.00[CEU][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898359	chr11:106523574-106656863	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv556228	chr11:106535709-106576657	Enhancers Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv898360	chr11:106566114-106598286	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv556229	chr11:106567017-106582622	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106552800-106628200	Weak transcription	Pancreas	Pancrea
2	chr11:106554800-106585000	Weak transcription	Fetal Lung	lung
3	chr11:106565400-106568600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:106566000-106569000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:106566200-106568600	Enhancers	NHEK	skin
6	chr11:106566200-106568800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:106567000-106567800	Weak transcription	NH-A	brain
8	chr11:106567400-106567800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:106567400-106568200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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