Variant report

Variant	rs12365375
Chromosome Location	chr11:17356826-17356827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs10832738	0.89[AMR][1000 genomes]
rs10832742	0.89[AMR][1000 genomes]
rs10832767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024165	0.89[AMR][1000 genomes]
rs11024196	0.89[AMR][1000 genomes]
rs11024198	0.89[AMR][1000 genomes]
rs11024311	1.00[ASN][1000 genomes]
rs12281007	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12285874	0.89[AMR][1000 genomes]
rs12292194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17299000-17357200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:17299000-17357600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:17299000-17360600	Weak transcription	Small Intestine	intestine
4	chr11:17299200-17357000	Weak transcription	Brain Substantia Nigra	brain
5	chr11:17299400-17357000	Weak transcription	Fetal Intestine Large	intestine
6	chr11:17308200-17357600	Weak transcription	HepG2	liver
7	chr11:17308200-17360800	Strong transcription	Fetal Thymus	thymus
8	chr11:17308200-17372600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:17308400-17361600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:17316000-17360000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:17316000-17361000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:17320800-17372400	Weak transcription	GM12878-XiMat	blood
13	chr11:17326400-17358000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:17330200-17358000	Weak transcription	K562	blood
15	chr11:17331800-17357400	Weak transcription	Brain Hippocampus Middle	brain
16	chr11:17331800-17362000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:17334000-17371000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr11:17335600-17361000	Strong transcription	Dnd41	blood
19	chr11:17335800-17357200	Weak transcription	Fetal Brain Male	brain
20	chr11:17335800-17357600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr11:17336200-17372600	Weak transcription	HUVEC	blood vessel
22	chr11:17336400-17360800	Weak transcription	HSMM	muscle
23	chr11:17336800-17358400	Weak transcription	Brain Germinal Matrix	brain
24	chr11:17336800-17365000	Weak transcription	NHEK	skin
25	chr11:17348400-17357000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr11:17350400-17365200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:17350600-17357400	Weak transcription	Fetal Intestine Small	intestine
28	chr11:17350800-17364800	Weak transcription	NHLF	lung
29	chr11:17351200-17358000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:17351200-17361400	Weak transcription	Pancreas	Pancrea
31	chr11:17352000-17357400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:17352400-17365800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:17352600-17365400	Weak transcription	HMEC	breast
34	chr11:17353800-17357200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr11:17354000-17358600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:17354000-17365200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr11:17354200-17357800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:17354200-17364800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:17354200-17369200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:17354400-17360400	Weak transcription	Brain Anterior Caudate	brain
41	chr11:17354400-17373000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr11:17354600-17365600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr11:17354600-17372400	Weak transcription	Liver	Liver
44	chr11:17355000-17357600	Weak transcription	Primary B cells from cord blood	blood
45	chr11:17355200-17360400	Weak transcription	Fetal Brain Female	brain
46	chr11:17355200-17365400	Weak transcription	NH-A	brain
47	chr11:17355600-17358600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:17355600-17364800	Weak transcription	NHDF-Ad	bronchial
49	chr11:17355800-17357800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:17355800-17357800	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links