Variant report

Variant	rs11024165
Chromosome Location	chr11:17157699-17157700
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17154024..17158946-chr11:17185264..17188139,4	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10466419	1.00[AFR][1000 genomes]
rs10832732	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10832738	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10832741	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832767	0.89[AMR][1000 genomes]
rs11024115	1.00[AFR][1000 genomes]
rs11024196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605718	1.00[CHD][hapmap]
rs12273798	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288376	1.00[AFR][1000 genomes]
rs12292194	0.89[AMR][1000 genomes]
rs12365375	0.89[AMR][1000 genomes]
rs186174	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214905	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214908	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757497	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv7691	chr11:17151593-17196894	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17105400-17172800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:17107000-17167200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:17108200-17177400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:17108600-17172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:17109800-17158400	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:17111600-17182000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr11:17111800-17157800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:17120400-17157800	Weak transcription	Stomach Mucosa	stomach
9	chr11:17120400-17181600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr11:17120800-17166200	Weak transcription	Pancreas	Pancrea
11	chr11:17120800-17171800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:17120800-17172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:17121000-17178000	Weak transcription	Psoas Muscle	Psoas
14	chr11:17125400-17172200	Weak transcription	Fetal Brain Male	brain
15	chr11:17125800-17181400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr11:17126800-17186400	Weak transcription	Colonic Mucosa	Colon
17	chr11:17129800-17158200	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr11:17130200-17174600	Weak transcription	Spleen	Spleen
19	chr11:17130200-17203800	Weak transcription	Aorta	Aorta
20	chr11:17132000-17167800	Weak transcription	Right Ventricle	heart
21	chr11:17132200-17163200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:17139000-17171200	Weak transcription	Fetal Brain Female	brain
23	chr11:17140000-17183400	Weak transcription	Small Intestine	intestine
24	chr11:17143000-17163800	Weak transcription	Gastric	stomach
25	chr11:17144200-17192800	Weak transcription	NHDF-Ad	bronchial
26	chr11:17144600-17166600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr11:17147800-17158000	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr11:17148000-17158000	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr11:17148400-17158000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:17148800-17158200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr11:17149400-17157800	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr11:17149400-17158000	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr11:17149400-17158200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:17149400-17158200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr11:17149800-17158000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:17149800-17158000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:17149800-17158200	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr11:17150800-17165800	Weak transcription	HMEC	breast
39	chr11:17150800-17172000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr11:17150800-17186000	Weak transcription	NHLF	lung
41	chr11:17151000-17163000	Weak transcription	Hela-S3	cervix
42	chr11:17151000-17165400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr11:17151000-17173200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr11:17152400-17160400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:17152600-17157800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr11:17152600-17158000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr11:17152800-17158000	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr11:17153000-17158000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:17153200-17157800	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr11:17153200-17160400	Strong transcription	Placenta	Placenta

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