Variant report

Variant	rs12365539
Chromosome Location	chr11:58563456-58563457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10501373	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10896831	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10896846	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10896855	1.00[AMR][1000 genomes]
rs11229621	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11229624	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11229647	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11229660	1.00[AMR][1000 genomes]
rs11229665	1.00[AMR][1000 genomes]
rs11229669	1.00[AMR][1000 genomes]
rs11229675	1.00[AMR][1000 genomes]
rs11229681	1.00[AMR][1000 genomes]
rs11229685	0.81[AMR][1000 genomes]
rs12576002	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1893630	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1938700	1.00[AMR][1000 genomes]
rs1938706	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1938710	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1938712	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1938720	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1938721	1.00[AMR][1000 genomes]
rs1938726	1.00[AMR][1000 genomes]
rs1938727	0.90[AMR][1000 genomes]
rs1943275	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2156348	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2212844	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2497369	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2507835	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34745169	0.90[AMR][1000 genomes]
rs4554906	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs494174	1.00[AMR][1000 genomes]
rs499891	0.90[AMR][1000 genomes]
rs511857	1.00[AMR][1000 genomes]
rs520075	1.00[AMR][1000 genomes]
rs539085	1.00[AMR][1000 genomes]
rs540592	1.00[AMR][1000 genomes]
rs542683	1.00[AMR][1000 genomes]
rs608998	1.00[AMR][1000 genomes]
rs610165	1.00[AMR][1000 genomes]
rs611013	0.90[AMR][1000 genomes]
rs615701	1.00[AMR][1000 genomes]
rs625951	1.00[AMR][1000 genomes]
rs660503	1.00[AMR][1000 genomes]
rs666476	1.00[AMR][1000 genomes]
rs675815	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832168	chr11:58394060-58564651	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv1048605	chr11:58534660-58672438	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1045858	chr11:58547772-58674568	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1052173	chr11:58553516-58678496	Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv523481	chr11:58553771-58632368	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv525355	chr11:58553771-58632368	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58562000-58572000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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