Variant report

Variant	rs11229669
Chromosome Location	chr11:58631592-58631593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 171 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:150)

rs_ID	r²[population]
rs10501373	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10750905	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792187	0.85[ASN][1000 genomes]
rs10792188	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10792189	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10792203	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10896831	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10896846	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10896855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11229621	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11229624	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11229647	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11229660	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11229665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11229685	0.81[AMR][1000 genomes]
rs12365539	1.00[AMR][1000 genomes]
rs12576002	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1893630	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1938700	1.00[AMR][1000 genomes]
rs1938706	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1938710	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1938712	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1938720	1.00[AMR][1000 genomes]
rs1938721	1.00[AMR][1000 genomes]
rs1938726	1.00[AMR][1000 genomes]
rs1938727	0.90[AMR][1000 genomes]
rs1943275	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1943286	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943287	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943288	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943289	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943290	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943291	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1943292	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943293	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943294	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943295	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943296	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943297	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943298	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943300	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1943301	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1943302	0.93[ASN][1000 genomes]
rs1943306	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2156348	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2156350	0.93[ASN][1000 genomes]
rs2156351	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2187269	0.89[ASN][1000 genomes]
rs2212844	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2212850	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2226794	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2497369	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2507835	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2849853	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2849854	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2856259	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3020908	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3020909	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34745169	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4103678	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4554906	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs490828	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs492802	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs493580	1.00[ASN][1000 genomes]
rs493659	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4939234	0.94[ASN][1000 genomes]
rs4939236	0.93[ASN][1000 genomes]
rs4939237	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4939238	0.93[ASN][1000 genomes]
rs494174	1.00[AMR][1000 genomes]
rs496601	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs497348	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs498036	0.83[ASN][1000 genomes]
rs499891	0.90[AMR][1000 genomes]
rs511857	1.00[AMR][1000 genomes]
rs512832	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs513590	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs518089	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs519043	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs519256	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs519310	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs520075	1.00[AMR][1000 genomes]
rs521781	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs524689	0.95[EUR][1000 genomes]
rs526640	0.95[EUR][1000 genomes]
rs529734	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs531737	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs535234	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs537098	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs539085	1.00[AMR][1000 genomes]
rs540592	1.00[AMR][1000 genomes]
rs542683	1.00[AMR][1000 genomes]
rs545803	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs547469	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs547540	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs549519	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs550275	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs552887	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs557895	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558013	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558099	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558146	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558403	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs561676	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs563687	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs564570	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567460	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs574497	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs576050	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs587953	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs591856	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs592308	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs598767	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs599254	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs600215	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs600559	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs608998	1.00[AMR][1000 genomes]
rs610165	1.00[AMR][1000 genomes]
rs611013	0.90[AMR][1000 genomes]
rs614365	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615237	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615701	1.00[AMR][1000 genomes]
rs621584	0.95[EUR][1000 genomes]
rs622512	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs625951	1.00[AMR][1000 genomes]
rs628312	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs630551	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs631452	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs635588	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs642957	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs643881	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs644312	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs651936	0.98[ASN][1000 genomes]
rs657792	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs660503	1.00[AMR][1000 genomes]
rs665148	0.95[EUR][1000 genomes]
rs666476	1.00[AMR][1000 genomes]
rs667889	0.86[EUR][1000 genomes]
rs668254	0.95[EUR][1000 genomes]
rs675815	1.00[AMR][1000 genomes]
rs678346	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs678880	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679551	0.95[EUR][1000 genomes]
rs680053	0.95[EUR][1000 genomes]
rs680976	0.95[EUR][1000 genomes]
rs682357	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs682780	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116544	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1048605	chr11:58534660-58672438	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1045858	chr11:58547772-58674568	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1052173	chr11:58553516-58678496	Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv523481	chr11:58553771-58632368	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv525355	chr11:58553771-58632368	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv1827788	chr11:58595883-58636405	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3444895	chr11:58614102-58779384	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	esv15332	chr11:58614671-58633269	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
11	nsv508634	chr11:58624088-58657382	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv825924	chr11:58626835-58634921	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
13	esv1824025	chr11:58626835-58669877	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	esv1831269	chr11:58626835-58669877	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv524785	chr11:58627834-58632368	Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
16	nsv555117	chr11:58627834-58635436	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
17	nsv555118	chr11:58627834-58635800	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
18	nsv555119	chr11:58627834-58636169	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
19	nsv555120	chr11:58627834-58636405	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
20	nsv819127	chr11:58629763-58635498	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
21	esv3461718	chr11:58629876-58638074	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58631400-58635000	Enhancers	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links