Variant report

Variant	rs524689
Chromosome Location	chr11:58632171-58632172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 187 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:158)

rs_ID	r²[population]
rs10501373	0.81[EUR][1000 genomes]
rs10750905	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10792187	0.82[AFR][1000 genomes]
rs10792188	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10792189	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10792203	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10896831	0.81[EUR][1000 genomes]
rs10896846	0.90[EUR][1000 genomes]
rs10896855	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11229621	0.81[EUR][1000 genomes]
rs11229624	0.81[EUR][1000 genomes]
rs11229647	0.90[EUR][1000 genomes]
rs11229660	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11229665	0.95[EUR][1000 genomes]
rs11229669	0.95[EUR][1000 genomes]
rs11229675	0.95[EUR][1000 genomes]
rs11229681	0.95[EUR][1000 genomes]
rs12576002	0.90[EUR][1000 genomes]
rs1893630	0.90[EUR][1000 genomes]
rs1938706	0.81[EUR][1000 genomes]
rs1938710	0.81[EUR][1000 genomes]
rs1938712	0.81[EUR][1000 genomes]
rs1938720	1.00[CEU][hapmap]
rs1938721	1.00[CEU][hapmap]
rs1938727	1.00[CEU][hapmap]
rs1943275	0.90[EUR][1000 genomes]
rs1943286	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1943287	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1943288	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1943289	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1943290	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1943291	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1943292	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1943293	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1943294	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1943295	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1943296	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1943297	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1943298	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1943300	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1943301	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1943302	0.87[AFR][1000 genomes]
rs1943306	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2156348	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2156350	0.87[AFR][1000 genomes]
rs2156351	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2187269	0.81[AFR][1000 genomes]
rs2212844	0.81[EUR][1000 genomes]
rs2212850	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2226794	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2497369	0.81[EUR][1000 genomes]
rs2507835	0.81[EUR][1000 genomes]
rs2849853	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2849854	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2849855	0.93[AFR][1000 genomes]
rs2856259	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3020908	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3020909	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34745169	0.95[EUR][1000 genomes]
rs4103678	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4554906	0.81[EUR][1000 genomes]
rs488093	0.88[AFR][1000 genomes]
rs490828	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs492802	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs493580	0.95[AFR][1000 genomes]
rs493659	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4939234	0.85[AFR][1000 genomes]
rs4939236	0.84[AFR][1000 genomes]
rs4939237	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4939238	0.83[AFR][1000 genomes]
rs496601	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs497348	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs498036	0.87[AFR][1000 genomes]
rs499891	1.00[CEU][hapmap]
rs512832	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs513590	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs518089	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs519043	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs519256	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs519310	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs521781	0.99[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs526640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs529734	0.98[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs531737	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs533438	0.92[AFR][1000 genomes]
rs535234	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs537098	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs539085	1.00[CEU][hapmap]
rs540573	0.82[AFR][1000 genomes]
rs545803	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs547469	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs547540	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs549519	0.92[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs550275	0.86[AFR][1000 genomes]
rs552887	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs557895	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs558013	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs558099	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs558146	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs558403	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs560816	0.86[AFR][1000 genomes]
rs561676	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs563687	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs564570	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs567460	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs570835	0.91[AFR][1000 genomes]
rs574497	0.92[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs576050	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs587953	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs591856	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs592308	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs593537	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs594379	0.83[AFR][1000 genomes]
rs598767	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs599254	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs599275	0.92[AFR][1000 genomes]
rs600215	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs600559	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs605870	0.94[AFR][1000 genomes]
rs608043	0.88[AFR][1000 genomes]
rs608998	1.00[CEU][hapmap]
rs609715	0.83[AFR][1000 genomes]
rs610165	1.00[CEU][hapmap]
rs614365	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs615237	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs615781	0.86[AFR][1000 genomes]
rs620633	0.88[AFR][1000 genomes]
rs621584	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs622512	0.95[EUR][1000 genomes]
rs628312	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs630551	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs631452	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs635588	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs642957	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs643881	0.98[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs644238	0.86[AFR][1000 genomes]
rs644312	0.98[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs645667	0.94[AFR][1000 genomes]
rs651936	0.94[AFR][1000 genomes]
rs657792	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs658309	0.86[AFR][1000 genomes]
rs664700	1.00[CEU][hapmap]
rs665148	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs666476	1.00[CEU][hapmap]
rs667889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs668254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs673192	1.00[CEU][hapmap]
rs675815	1.00[CEU][hapmap]
rs678346	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs678727	0.88[AFR][1000 genomes]
rs678880	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs679551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs680053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs680976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs682357	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs682780	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7116544	0.83[YRI][hapmap];0.87[AFR][1000 genomes]
rs7933339	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1048605	chr11:58534660-58672438	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1045858	chr11:58547772-58674568	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1052173	chr11:58553516-58678496	Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv523481	chr11:58553771-58632368	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv525355	chr11:58553771-58632368	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv1827788	chr11:58595883-58636405	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3444895	chr11:58614102-58779384	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	esv15332	chr11:58614671-58633269	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
11	nsv508634	chr11:58624088-58657382	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv825924	chr11:58626835-58634921	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
13	esv1824025	chr11:58626835-58669877	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	esv1831269	chr11:58626835-58669877	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv524785	chr11:58627834-58632368	Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
16	nsv555117	chr11:58627834-58635436	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
17	nsv555118	chr11:58627834-58635800	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
18	nsv555119	chr11:58627834-58636169	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
19	nsv555120	chr11:58627834-58636405	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
20	nsv819127	chr11:58629763-58635498	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
21	esv3461718	chr11:58629876-58638074	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
22	esv3461763	chr11:58631637-58636662	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
23	esv3461730	chr11:58631695-58636643	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
24	esv3461752	chr11:58631696-58636628	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
25	nsv435928	chr11:58631698-58636823	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
26	esv3461741	chr11:58631708-58636581	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
27	esv3461774	chr11:58631758-58636559	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
28	esv3461785	chr11:58631773-58636556	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
29	esv13443	chr11:58631790-58636511	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58631400-58635000	Enhancers	Thymus	Thymus
2	chr11:58631600-58632400	Enhancers	Fetal Thymus	thymus

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