Variant report

Variant	rs1236948
Chromosome Location	chr7:26448166-26448167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10951138	0.80[EUR][1000 genomes]
rs1229673	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1229677	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1229678	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1229679	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1229681	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1229684	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1997358	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1997359	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34041259	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9791381	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26439000-26452200	Weak transcription	Ovary	ovary
2	chr7:26439000-26452800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:26439000-26453000	Weak transcription	Lung	lung
4	chr7:26439800-26453000	Weak transcription	Pancreas	Pancrea
5	chr7:26440800-26460200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr7:26444200-26452800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:26444600-26453000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:26445400-26449400	Weak transcription	K562	blood
9	chr7:26446000-26449400	Weak transcription	Fetal Stomach	stomach
10	chr7:26446000-26471200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr7:26446200-26449000	Weak transcription	Fetal Lung	lung
12	chr7:26446800-26459800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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