Variant report

Variant	rs10951138
Chromosome Location	chr7:26481804-26481805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26427415..26429605-chr7:26480362..26482553,2	K562	blood:
2	chr7:26468045..26469569-chr7:26481144..26484097,2	K562	blood:
3	chr7:26435194..26437360-chr7:26480063..26481898,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1229673	0.83[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1229677	0.83[CHB][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1229678	0.83[CHB][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1229679	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1229681	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1229684	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1236948	0.80[EUR][1000 genomes]
rs1919936	0.88[YRI][hapmap]
rs1919937	0.83[CHB][hapmap]
rs1997358	0.82[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1997359	0.83[CHB][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34041259	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9791381	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv606461	chr7:26460409-26485860	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Visceral adipose tissue/subcutaneous adipose tissue ratio	22589738	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10951138	STK31	cis	parietal	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26460600-26484600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:26477000-26482600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:26479200-26482600	Enhancers	Fetal Lung	lung
4	chr7:26480200-26482800	Weak transcription	K562	blood
5	chr7:26481400-26486400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:26481400-26486600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:26481400-26489000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:26481400-26489000	Weak transcription	Fetal Stomach	stomach
9	chr7:26481600-26482400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:26481600-26482600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:26481600-26486800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr7:26481600-26486800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr7:26481600-26487000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr7:26481600-26487400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:26481600-26488400	Weak transcription	Pancreas	Pancrea
16	chr7:26481600-26490400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr7:26481600-26491200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:26481600-26498400	Weak transcription	Brain Germinal Matrix	brain
19	chr7:26481800-26482600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:26481800-26483000	Weak transcription	Fetal Brain Male	brain
21	chr7:26481800-26483000	Weak transcription	Lung	lung
22	chr7:26481800-26483200	Weak transcription	Fetal Brain Female	brain
23	chr7:26481800-26485000	Weak transcription	Psoas Muscle	Psoas
24	chr7:26481800-26490200	Weak transcription	Fetal Kidney	kidney

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