Variant report

Variant	rs9791381
Chromosome Location	chr7:26475307-26475308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10951138	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1229673	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1229677	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1229678	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1229679	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1229681	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1229684	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1236948	0.81[EUR][1000 genomes]
rs1997358	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1997359	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34041259	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv606461	chr7:26460409-26485860	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26460600-26484600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:26466400-26479200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:26466400-26479200	Weak transcription	Fetal Brain Female	brain
4	chr7:26469200-26476600	Weak transcription	Fetal Lung	lung
5	chr7:26470600-26480400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:26474000-26476600	Weak transcription	Fetal Stomach	stomach
7	chr7:26474200-26475800	Weak transcription	Fetal Brain Male	brain
8	chr7:26475200-26476800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:26475200-26478200	Enhancers	Fetal Kidney	kidney
10	chr7:26475200-26479800	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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