Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12367934	0.84[AFR][1000 genomes]
rs176281	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1874364	0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs287003	0.85[ASN][1000 genomes]
rs287004	0.85[ASN][1000 genomes]
rs287014	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs287015	0.84[EUR][1000 genomes]
rs287016	0.85[EUR][1000 genomes]
rs287017	0.84[EUR][1000 genomes]
rs287020	0.87[EUR][1000 genomes]
rs287022	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs287068	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs287070	0.83[ASN][1000 genomes]
rs287071	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4768360	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7136423	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7138511	0.86[AMR][1000 genomes]
rs7297203	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7314593	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7963186	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7971920	0.86[CEU][hapmap]
rs7974146	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899041	chr12:42005690-42072514	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv832386	chr12:42017259-42189476	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42014000-42019200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr12:42015200-42020600	Weak transcription	Brain Germinal Matrix	brain
3	chr12:42018200-42019200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:42018400-42018800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr12:42018400-42019400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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