Variant report

Variant	rs176281
Chromosome Location	chr12:42040951-42040952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:42040861..42043664-chr12:42053965..42056678,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12370147	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1874364	0.84[ASN][1000 genomes]
rs287010	0.84[EUR][1000 genomes]
rs287011	0.85[EUR][1000 genomes]
rs287012	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs287014	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs287015	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs287016	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs287017	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs287020	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs287022	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs287024	0.83[EUR][1000 genomes]
rs287068	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs287071	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4768360	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7136423	0.82[ASN][1000 genomes]
rs7297203	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7314593	0.81[ASN][1000 genomes]
rs7963186	0.82[ASN][1000 genomes]
rs7971920	0.90[CEU][hapmap]
rs7974146	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899041	chr12:42005690-42072514	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv832386	chr12:42017259-42189476	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv870246	chr12:42028555-42066192	Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv899042	chr12:42031131-42072514	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1040209	chr12:42031660-42060070	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1053183	chr12:42037480-42059813	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1053830	chr12:42037480-42060070	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv520892	chr12:42038171-42058138	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv558701	chr12:42038171-42105409	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42038000-42042200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:42039800-42041400	Enhancers	Brain Anterior Caudate	brain
3	chr12:42039800-42041400	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr12:42039800-42041600	Enhancers	Brain Substantia Nigra	brain
5	chr12:42040000-42041400	Enhancers	Brain Cingulate Gyrus	brain
6	chr12:42040400-42041600	Enhancers	Brain Hippocampus Middle	brain
7	chr12:42040800-42041200	Enhancers	Brain Angular Gyrus	brain

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