Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12367934	0.81[AFR][1000 genomes]
rs12370147	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs176281	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1874364	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs287003	0.85[ASN][1000 genomes]
rs287004	0.85[ASN][1000 genomes]
rs287014	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs287015	0.83[EUR][1000 genomes]
rs287016	0.84[EUR][1000 genomes]
rs287017	0.83[EUR][1000 genomes]
rs287020	0.86[EUR][1000 genomes]
rs287022	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs287068	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs287070	0.83[ASN][1000 genomes]
rs287071	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7136423	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7138511	0.89[AMR][1000 genomes]
rs7297203	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7314593	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7963186	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7971920	0.86[CEU][hapmap]
rs7974146	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899041	chr12:42005690-42072514	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42000600-42012000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:42008000-42008200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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