Variant report

Variant	rs12372879
Chromosome Location	chr14:65140426-65140427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65138393..65141206-chr14:65169744..65173083,3	MCF-7	breast:
2	chr14:65137874..65140791-chr14:65142432..65144848,2	K562	blood:
3	chr14:65139588..65142521-chr14:65175762..65178559,2	MCF-7	breast:
4	chr14:65138592..65140467-chr14:65210995..65212825,2	MCF-7	breast:
5	chr14:65138681..65140469-chr14:65181895..65183745,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126822	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12880856	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6573563	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6573564	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7141456	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65135400-65149200	Weak transcription	Aorta	Aorta
2	chr14:65138400-65140800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr14:65138400-65141000	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr14:65138400-65141200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr14:65138400-65141400	Enhancers	Primary T cells from cord blood	blood
6	chr14:65138400-65141400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr14:65138400-65141400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr14:65138400-65141600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr14:65138400-65144000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr14:65138600-65140600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr14:65138600-65141200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr14:65138600-65142200	Weak transcription	Stomach Mucosa	stomach
13	chr14:65138600-65142400	Enhancers	A549	lung
14	chr14:65138600-65142600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr14:65138600-65143800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr14:65138800-65141600	Weak transcription	Liver	Liver
17	chr14:65138800-65142000	Weak transcription	Fetal Intestine Small	intestine
18	chr14:65138800-65142400	Weak transcription	Adipose Nuclei	Adipose
19	chr14:65138800-65144200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr14:65138800-65144200	Weak transcription	Brain Substantia Nigra	brain
21	chr14:65138800-65146600	Weak transcription	Brain Angular Gyrus	brain
22	chr14:65138800-65146600	Weak transcription	Fetal Intestine Large	intestine
23	chr14:65139000-65141000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr14:65139000-65141000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr14:65139000-65143200	Enhancers	Primary T cells fromperipheralblood	blood
26	chr14:65139200-65142600	Enhancers	HMEC	breast
27	chr14:65139400-65140800	Enhancers	Primary B cells from cord blood	blood
28	chr14:65139400-65142600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr14:65139600-65140600	Enhancers	Primary hematopoietic stem cells	blood
30	chr14:65139600-65140800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr14:65139600-65140800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr14:65139600-65141200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr14:65139600-65142600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr14:65139600-65142600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr14:65139800-65140600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr14:65139800-65140800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr14:65139800-65141000	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr14:65139800-65141000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr14:65139800-65141200	Enhancers	Esophagus	oesophagus
40	chr14:65139800-65141600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
41	chr14:65139800-65141600	Enhancers	Fetal Muscle Leg	muscle
42	chr14:65139800-65142600	Enhancers	NHEK	skin
43	chr14:65140000-65140600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
44	chr14:65140000-65140800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr14:65140000-65140800	Weak transcription	Colonic Mucosa	Colon
46	chr14:65140000-65141000	Enhancers	Fetal Thymus	thymus
47	chr14:65140000-65141400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr14:65140000-65143400	Enhancers	Spleen	Spleen
49	chr14:65140200-65140600	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr14:65140200-65140600	Bivalent Enhancer	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links