Variant report

Variant	rs7141456
Chromosome Location	chr14:65144876-65144877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65143231..65150356-chr14:65170206..65174576,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126822	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12372879	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12880856	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4899142	0.92[ASN][1000 genomes]
rs6573563	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6573564	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8007257	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65135400-65149200	Weak transcription	Aorta	Aorta
2	chr14:65138800-65146600	Weak transcription	Brain Angular Gyrus	brain
3	chr14:65138800-65146600	Weak transcription	Fetal Intestine Large	intestine
4	chr14:65140800-65148800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr14:65141000-65145400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr14:65141000-65145600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:65141000-65146200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr14:65141000-65146600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:65141000-65146800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr14:65142400-65146600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr14:65142400-65146800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:65142400-65146800	Weak transcription	A549	lung
13	chr14:65142600-65145600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:65142600-65145600	Weak transcription	HMEC	breast
15	chr14:65142600-65146200	Weak transcription	NHEK	skin
16	chr14:65142600-65146400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:65142600-65146400	Weak transcription	Esophagus	oesophagus
18	chr14:65142600-65146600	Weak transcription	Fetal Intestine Small	intestine
19	chr14:65142600-65146600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr14:65142600-65146800	Weak transcription	Fetal Heart	heart
21	chr14:65142600-65147000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr14:65142600-65147000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr14:65142600-65148600	Weak transcription	Stomach Mucosa	stomach
24	chr14:65142600-65149000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr14:65142600-65154400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr14:65142800-65147000	Weak transcription	Fetal Muscle Trunk	muscle
27	chr14:65143000-65146600	Weak transcription	Hela-S3	cervix
28	chr14:65143400-65146800	Weak transcription	Placenta	Placenta
29	chr14:65143400-65149200	Weak transcription	Spleen	Spleen
30	chr14:65143600-65148200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr14:65143800-65146800	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr14:65144000-65146800	Weak transcription	Fetal Muscle Leg	muscle
33	chr14:65144200-65145600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr14:65144400-65145600	Enhancers	Brain Hippocampus Middle	brain
35	chr14:65144400-65146400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr14:65144400-65146600	Weak transcription	Stomach Smooth Muscle	stomach
37	chr14:65144400-65147000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr14:65144600-65145400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr14:65144600-65146400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr14:65144600-65146600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr14:65144800-65145600	Weak transcription	Brain Anterior Caudate	brain
42	chr14:65144800-65146200	Weak transcription	Brain Substantia Nigra	brain

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