Variant report
| Variant | rs12373871 |
|---|---|
| Chromosome Location | chr20:24182011-24182012 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:24180566..24182316-chr20:24260551..24262639,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs28778436 | 1.00[ASN][1000 genomes] |
| rs41282312 | 1.00[ASN][1000 genomes] |
| rs41282314 | 1.00[ASN][1000 genomes] |
| rs41282316 | 1.00[ASN][1000 genomes] |
| rs6076195 | 1.00[ASN][1000 genomes] |
| rs6076200 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6076206 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6083406 | 1.00[ASN][1000 genomes] |
| rs6083408 | 1.00[ASN][1000 genomes] |
| rs6083409 | 1.00[ASN][1000 genomes] |
| rs6083424 | 1.00[ASN][1000 genomes] |
| rs6083432 | 1.00[ASN][1000 genomes] |
| rs6083433 | 1.00[ASN][1000 genomes] |
| rs6083438 | 1.00[ASN][1000 genomes] |
| rs6083439 | 1.00[ASN][1000 genomes] |
| rs6083440 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6083441 | 1.00[ASN][1000 genomes] |
| rs6083449 | 1.00[ASN][1000 genomes] |
| rs73329997 | 1.00[ASN][1000 genomes] |
| rs73337581 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7354351 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv9793 | chr20:23939613-24734850 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | esv3328348 | chr20:24095746-24285830 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv833945 | chr20:24163437-24349462 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:24180400-24182400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
