Variant report
| Variant | rs73337581 |
|---|---|
| Chromosome Location | chr20:24214296-24214297 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| RNU1-23P | TF binding region |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs12373871 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28778436 | 1.00[ASN][1000 genomes] |
| rs41282312 | 1.00[ASN][1000 genomes] |
| rs41282314 | 1.00[ASN][1000 genomes] |
| rs41282316 | 1.00[ASN][1000 genomes] |
| rs6036707 | 0.88[EUR][1000 genomes] |
| rs6036709 | 0.84[EUR][1000 genomes] |
| rs6049549 | 0.88[EUR][1000 genomes] |
| rs6049550 | 0.88[EUR][1000 genomes] |
| rs6049553 | 0.84[EUR][1000 genomes] |
| rs6049564 | 0.84[EUR][1000 genomes] |
| rs6076195 | 1.00[ASN][1000 genomes] |
| rs6076200 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6076206 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6083406 | 1.00[ASN][1000 genomes] |
| rs6083408 | 1.00[ASN][1000 genomes] |
| rs6083409 | 1.00[ASN][1000 genomes] |
| rs6083424 | 1.00[ASN][1000 genomes] |
| rs6083432 | 1.00[ASN][1000 genomes] |
| rs6083433 | 1.00[ASN][1000 genomes] |
| rs6083438 | 1.00[ASN][1000 genomes] |
| rs6083439 | 1.00[ASN][1000 genomes] |
| rs6083440 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6083441 | 1.00[ASN][1000 genomes] |
| rs6083449 | 1.00[ASN][1000 genomes] |
| rs6106812 | 0.84[EUR][1000 genomes] |
| rs73329997 | 1.00[ASN][1000 genomes] |
| rs7354351 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv9793 | chr20:23939613-24734850 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | esv3328348 | chr20:24095746-24285830 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv833945 | chr20:24163437-24349462 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv1058146 | chr20:24210196-24531087 | Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | esv3359294 | chr20:24214173-24214487 | Inactive region | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
