Variant report

Variant	rs6049553
Chromosome Location	chr20:24237109-24237110
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs56104572	1.00[ASN][1000 genomes]
rs59054030	1.00[ASN][1000 genomes]
rs59561448	1.00[ASN][1000 genomes]
rs6036707	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036709	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036718	0.85[EUR][1000 genomes]
rs6049548	1.00[ASN][1000 genomes]
rs6049549	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049550	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049554	1.00[ASN][1000 genomes]
rs6049555	1.00[ASN][1000 genomes]
rs6049556	1.00[ASN][1000 genomes]
rs6049557	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049561	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049562	0.86[EUR][1000 genomes]
rs6049564	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049566	0.85[EUR][1000 genomes]
rs6049567	0.85[EUR][1000 genomes]
rs6049568	0.85[EUR][1000 genomes]
rs6049572	0.81[EUR][1000 genomes]
rs6076206	0.84[EUR][1000 genomes]
rs6076214	1.00[ASN][1000 genomes]
rs6083440	0.84[EUR][1000 genomes]
rs6083463	1.00[ASN][1000 genomes]
rs6083464	1.00[ASN][1000 genomes]
rs6083465	1.00[ASN][1000 genomes]
rs6083467	1.00[ASN][1000 genomes]
rs6106812	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6106813	1.00[ASN][1000 genomes]
rs73333779	1.00[ASN][1000 genomes]
rs73335617	1.00[ASN][1000 genomes]
rs73337581	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv833945	chr20:24163437-24349462	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24229800-24237200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:24236800-24237200	Enhancers	Gastric	stomach
3	chr20:24237000-24237200	Enhancers	Fetal Muscle Trunk	muscle
4	chr20:24237000-24237200	Enhancers	Fetal Muscle Leg	muscle

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